Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G099200.1 | Wheat | nucleus | 89.45 | 89.0 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 86.93 | 86.5 |
| TraesCS2A01G084500.1 | Wheat | cytosol | 83.92 | 81.46 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 77.39 | 78.97 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 76.38 | 75.25 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 36.18 | 52.55 |
| OQU80443 | Sorghum | cytosol | 48.24 | 51.89 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 40.2 | 49.38 |
| Os08t0420700-01 | Rice | cytosol, nucleus, plastid | 46.73 | 49.21 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 40.2 | 47.9 |
| Zm00001d032324_P001 | Maize | cytosol | 44.22 | 47.31 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 42.71 | 47.22 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 41.71 | 45.6 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 44.72 | 44.5 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 40.7 | 43.78 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 38.69 | 43.75 |
| KRH74672 | Soybean | cytosol | 35.68 | 41.28 |
| PGSC0003DMT400040233 | Potato | mitochondrion | 33.67 | 40.61 |
| AT5G62900.1 | Thale cress | cytosol | 32.66 | 40.37 |
| AT5G50090.1 | Thale cress | cytosol | 32.16 | 40.25 |
| KRG99257 | Soybean | cytosol | 35.18 | 40.23 |
| KRH69484 | Soybean | cytosol | 34.67 | 40.12 |
| VIT_01s0026g00730.t01 | Wine grape | cytosol | 35.18 | 40.0 |
| KRH45741 | Soybean | cytosol | 35.18 | 39.77 |
| Solyc05g006030.2.1 | Tomato | cytosol | 32.66 | 39.16 |
| Bra000609.1-P | Field mustard | cytosol | 30.15 | 38.22 |
| CDX84364 | Canola | cytosol | 30.65 | 38.12 |
| Bra010130.1-P | Field mustard | nucleus | 30.65 | 38.12 |
| CDY00334 | Canola | nucleus | 30.65 | 38.12 |
| KRH57030 | Soybean | cytosol | 34.17 | 37.78 |
| CDY21433 | Canola | cytosol | 29.65 | 37.58 |
| KRH63480 | Soybean | cytosol | 32.66 | 37.57 |
| KRH03351 | Soybean | cytosol | 34.17 | 37.36 |
| PGSC0003DMT400083024 | Potato | cytosol | 30.15 | 37.27 |
| KRH54436 | Soybean | cytosol | 33.67 | 37.02 |
| Solyc06g071320.2.1 | Tomato | cytosol | 28.64 | 36.77 |
| Bra035874.1-P | Field mustard | cytosol | 30.15 | 35.93 |
| VIT_17s0000g07840.t01 | Wine grape | cytosol | 33.17 | 35.87 |
| AT1G60010.1 | Thale cress | cytosol | 31.16 | 35.84 |
| Bra027820.1-P | Field mustard | cytosol | 31.16 | 35.03 |
| CDY70563 | Canola | cytosol | 31.16 | 34.64 |
| CDY30923 | Canola | cytosol | 30.65 | 34.46 |
| CDY24507 | Canola | cytosol | 30.15 | 34.29 |
| Bra035410.1-P | Field mustard | cytosol | 30.15 | 34.29 |
| Solyc03g114020.2.1 | Tomato | cytosol | 32.16 | 34.22 |
| CDX87268 | Canola | cytosol | 27.14 | 33.75 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 38.19 | 33.63 |
| CDY69854 | Canola | cytosol | 29.65 | 33.52 |
| PGSC0003DMT400063216 | Potato | cytosol | 31.16 | 33.16 |
| CDY07805 | Canola | nucleus | 27.64 | 33.13 |
| CDY34887 | Canola | cytosol | 27.14 | 32.53 |
| Bra031717.1-P | Field mustard | cytosol | 27.14 | 32.53 |
| AT1G10530.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 27.14 | 32.53 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G082400.1 | EnsemblPlantsGene:TraesCS2D01G082400 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF13 | PFAM:PF14009 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:35564378..35565075
Molecular Weight (calculated)
22274.4 Da
IEP (calculated)
10.350
GRAVY (calculated)
-0.854
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHPGDG KVERLHWPTT AADVMRRNPG HYVALVVLHH VDAEPDPAVA GERGGARVTK IKLLKPKDTL LLGQVYRLIT SQEVTKAVQT
101: RKQERMRGCD EAIEQEWPRL HWRRQPPRPR GDNAATAAAN GEQRQPAEHQ ERKRLEKDRH HRSMAAARGR GRHWRPALQS ITESSSSGHA DCEDILLSK
101: RKQERMRGCD EAIEQEWPRL HWRRQPPRPR GDNAATAAAN GEQRQPAEHQ ERKRLEKDRH HRSMAAARGR GRHWRPALQS ITESSSSGHA DCEDILLSK
001: MGNCQAVDTA RVVIQHPNGK EEKLSCPVSA SYVMKMNPGH CVSLLISTTA LSSASSGHGG PLRLTRIKLL RPTDTLVLGH VYRLITTKEV MKGLMAKKCS
101: KLKKESKGSD DKLEMVKAIN STKLDNEDQL QMKKQEKERS RISRSWQPSL QSISEGGSS
101: KLKKESKGSD DKLEMVKAIN STKLDNEDQL QMKKQEKERS RISRSWQPSL QSISEGGSS
Arabidopsis Description
At5g50090 [Source:UniProtKB/TrEMBL;Acc:Q9FGA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.