Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G039700.1 | Wheat | cytosol | 81.86 | 81.86 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 78.76 | 79.82 |
| Os03t0200200-01 | Rice | cytosol | 50.0 | 52.56 |
| Zm00001d028118_P001 | Maize | cytosol | 49.56 | 51.61 |
| Zm00001d048162_P001 | Maize | nucleus | 47.35 | 51.2 |
| KXG39943 | Sorghum | cytosol | 46.9 | 47.53 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 40.27 | 45.96 |
| PGSC0003DMT400055171 | Potato | cytosol | 34.96 | 44.63 |
| Solyc02g092240.2.1 | Tomato | cytosol | 34.51 | 44.57 |
| KRH58136 | Soybean | nucleus | 35.4 | 44.44 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 40.71 | 44.23 |
| CDY18668 | Canola | nucleus | 34.96 | 44.13 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 34.96 | 43.89 |
| KRH04405 | Soybean | cytosol | 34.51 | 43.82 |
| Bra037835.1-P | Field mustard | nucleus | 34.51 | 43.09 |
| CDY37844 | Canola | nucleus | 34.07 | 43.02 |
| CDX81304 | Canola | nucleus | 34.96 | 42.93 |
| AT5G67620.1 | Thale cress | nucleus | 34.51 | 42.86 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 38.05 | 42.57 |
| CDY43585 | Canola | nucleus | 32.3 | 41.48 |
| Bra031842.1-P | Field mustard | nucleus | 33.63 | 39.79 |
| Bra024434.1-P | Field mustard | nucleus | 28.32 | 38.79 |
| CDY36508 | Canola | nucleus | 28.32 | 38.79 |
| TraesCS7D01G194000.1 | Wheat | cytosol | 27.43 | 38.27 |
| TraesCS2D01G082400.1 | Wheat | cytosol, mitochondrion, nucleus | 33.63 | 38.19 |
| CDY08733 | Canola | nucleus | 27.88 | 38.18 |
| TraesCS2D01G082300.1 | Wheat | cytosol | 33.63 | 38.0 |
| TraesCS2D01G082500.1 | Wheat | cytosol | 32.3 | 37.44 |
| TraesCS6D01G288900.1 | Wheat | cytosol | 29.65 | 37.22 |
| TraesCS2D01G082600.1 | Wheat | cytosol | 32.3 | 36.14 |
| TraesCS5D01G205700.1 | Wheat | cytosol | 29.65 | 33.5 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G260500.1 | EnsemblPlantsGene:TraesCS4D01G260500 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0005874 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 | PFAM:PF14009 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:430793470..430794721
Molecular Weight (calculated)
23853.2 Da
IEP (calculated)
6.685
GRAVY (calculated)
-0.473
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHPASG RTELAYWSLP AGEVMAANPG HYVAAVITAP HTASEGGGAA PVKHLKLLRP DDTLLLGRVY RLVSFEEVLK EFATKRHVKL
101: SRVMVKAKDE VAAPTKPAKP RRRRGSNGGG GADAGVVREE SDRSLAKIMR QSVEEEKEAT AGPTSGRVPK PGANDNNGVA ASEPGLDDDD DDDCDLESLL
201: PPGLALGRRL GPQWRPALQS IAEGRD
101: SRVMVKAKDE VAAPTKPAKP RRRRGSNGGG GADAGVVREE SDRSLAKIMR QSVEEEKEAT AGPTSGRVPK PGANDNNGVA ASEPGLDDDD DDDCDLESLL
201: PPGLALGRRL GPQWRPALQS IAEGRD
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.