Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P18980_001 | Banana | nucleus | 25.96 | 52.43 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 47.12 | 49.49 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 47.6 | 49.01 |
| CDY18668 | Canola | nucleus | 39.9 | 46.37 |
| Bra037835.1-P | Field mustard | nucleus | 39.9 | 45.86 |
| CDY37844 | Canola | nucleus | 39.42 | 45.81 |
| CDY43585 | Canola | nucleus | 38.46 | 45.45 |
| Solyc02g092240.2.1 | Tomato | cytosol | 37.98 | 45.14 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 37.98 | 45.14 |
| CDX81304 | Canola | nucleus | 39.9 | 45.11 |
| AT5G67620.1 | Thale cress | nucleus | 39.42 | 45.05 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 38.94 | 45.0 |
| KRH04405 | Soybean | cytosol | 38.46 | 44.94 |
| Os03t0200200-01 | Rice | cytosol | 46.15 | 44.65 |
| KRH58136 | Soybean | nucleus | 38.46 | 44.44 |
| PGSC0003DMT400055171 | Potato | cytosol | 37.5 | 44.07 |
| Bra031842.1-P | Field mustard | nucleus | 39.42 | 42.93 |
| Zm00001d048162_P001 | Maize | nucleus | 42.31 | 42.11 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 39.9 | 41.5 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 44.71 | 41.15 |
| Zm00001d028118_P001 | Maize | cytosol | 42.79 | 41.01 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 26.92 | 40.88 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 44.23 | 40.71 |
| CDY36508 | Canola | nucleus | 32.21 | 40.61 |
| CDY08733 | Canola | nucleus | 32.21 | 40.61 |
| Bra024434.1-P | Field mustard | nucleus | 32.21 | 40.61 |
| KXG39943 | Sorghum | cytosol | 42.79 | 39.91 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 42.31 | 39.46 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 29.33 | 36.53 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 31.73 | 35.68 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 29.81 | 35.23 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 29.81 | 34.07 |
| Os10t0352000-01 | Rice | cytosol | 25.0 | 31.52 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P31090_001 | EnsemblPlants:GSMUA_Achr8T31090_001 | EnsemblPlantsGene:GSMUA_Achr8G31090_001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PFAM:PF14009 |
| SEG:seg | UniParc:UPI000296DA2E | UniProt:M0TV61 | MapMan:35.2 | : | : |
Description
Putative Protein norD [Source:GMGC_GENE;Acc:GSMUA_Achr8G31090_001]
Coordinates
chr8:-:32876166..32881590
Molecular Weight (calculated)
22372.5 Da
IEP (calculated)
11.143
GRAVY (calculated)
-0.468
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVVIHHPGGK VERAYWSLSA SQVMAANPGH YVAVIVDGYP SRLPPPALQS STSSFRAYRS CSGSSSAGGA APVKHLKLLR PDDALHIGHV
101: YRLISFEEVV REFAWKRHVK LSRLLVKEED KTRRPRRGHS RRGRGGATTI AGARRRQSRN DGGSGAAEPD TSPATVCFTS PVISSTKTTP ARHGQWRPAL
201: QSIAEVGS
101: YRLISFEEVV REFAWKRHVK LSRLLVKEED KTRRPRRGHS RRGRGGATTI AGARRRQSRN DGGSGAAEPD TSPATVCFTS PVISSTKTTP ARHGQWRPAL
201: QSIAEVGS
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.