Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012851_P001 | Maize | cytosol | 65.6 | 66.58 |
| OQU90613 | Sorghum | cytosol | 66.13 | 66.31 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 64.8 | 65.76 |
| Os03t0849600-01 | Rice | cytosol | 65.87 | 65.52 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 65.47 | 65.38 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 65.6 | 64.4 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 65.6 | 64.4 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 65.47 | 64.02 |
| KRH03947 | Soybean | cytosol | 64.27 | 63.84 |
| KRH57220 | Soybean | cytosol | 63.73 | 63.31 |
| Solyc08g006660.1.1 | Tomato | plastid | 61.33 | 61.99 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 61.33 | 61.99 |
| Zm00001d034842_P001 | Maize | cytosol | 65.6 | 61.89 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 61.87 | 61.38 |
| CDX92658 | Canola | plastid | 60.53 | 59.97 |
| CDY11039 | Canola | cytosol | 60.13 | 59.58 |
| CDY34317 | Canola | cytosol, plastid | 59.07 | 58.44 |
| Bra013840.1-P | Field mustard | mitochondrion | 50.93 | 58.32 |
| CDY03412 | Canola | plastid | 59.07 | 58.29 |
| CDX70811 | Canola | plastid | 53.73 | 55.59 |
| CDY51233 | Canola | cytosol, plastid | 53.6 | 55.52 |
| Bra006453.1-P | Field mustard | cytosol, plastid | 53.07 | 54.97 |
| Bra019205.1-P | Field mustard | cytosol | 60.53 | 53.29 |
Protein Annotations
| MapMan:22.6.2.2 | InterPro:COG2 | InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | EnsemblPlantsGene:GSMUA_AchrUn_randomG00970_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP00970_001 | EnsemblPlants:GSMUA_AchrUn_randomT00970_001 | UniProt:M0U5A9 | PFAM:PF06148 | PFAM:PF12022 | PANTHER:PTHR12961 |
| UniParc:UPI00029632D7 | SEG:seg | : | : | : | : |
Description
Putative Conserved oligomeric Golgi complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00970_001]
Coordinates
chrchrUn_random:+:3511949..3532184
Molecular Weight (calculated)
83584.3 Da
IEP (calculated)
6.068
GRAVY (calculated)
-0.091
Length
750 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDLVTPRSP ATDLFGDPID AKPPWFKSSS FLRPDFVPEF YVADLRSFVP LESLAAELRS HLADLKAELV DLINRDYADF VGLSTRLVDV DAAAGRMRAP
101: LVEFRDKVAS FRAVVDAALV AIRSGLRQRS EASAAREILQ LLLDTFHVVS KVEKLIKELP TTHSNQSSPD TVSSEKGSLT NANSIQNVEI GSNLREDQSI
201: LLERIASEMN RLKFYTSHAK NLPFIENMEK RIQNATLMLD GSLGNCFVDG LENRDAKAIY NCLRAFAAID NTSAAEELFR KTIVSPLIQQ IIPHDHLQTV
301: GGASSDELEH DYQKIMQCIE KDCKFLLEIS STANSGFHVF DFLANSVLKE VLIAIQKGKP GAFSPGRPAE FLKNYKSSLG FLAILEGYCP SRSAVVKFRS
401: EVVYMDFIRQ WNVGVYFSLR FQEIAGALDS ALMASSINPV DIQGKPHKLT MKQSITLMES LKSCWSDDVL ILSHSDKFLR LTLQLVSRYS SWLSHGLSAR
501: KARSASSRPV QNSEWSISAQ VEDFIYVMHD VTFLGSELSG VFLGQVIQVL GSCSDEVVDL VRQSILQAGK NLEDLLPAIM DTMVEAIVEK SVEDLRQLKG
601: VTATYRLTNK LPVIPSQYVS LILRPLKAFL DGEHIKLLMK DARNELLHGV TEKITTRYYE LAADTVNVAR KTESSLLRLR QGAQRRVGAT SDSVDNNISD
701: TEKICMQLFL DVQEYGRNLS AMGIEASEIS AYRSLWQCVA PEDRQSQITL
101: LVEFRDKVAS FRAVVDAALV AIRSGLRQRS EASAAREILQ LLLDTFHVVS KVEKLIKELP TTHSNQSSPD TVSSEKGSLT NANSIQNVEI GSNLREDQSI
201: LLERIASEMN RLKFYTSHAK NLPFIENMEK RIQNATLMLD GSLGNCFVDG LENRDAKAIY NCLRAFAAID NTSAAEELFR KTIVSPLIQQ IIPHDHLQTV
301: GGASSDELEH DYQKIMQCIE KDCKFLLEIS STANSGFHVF DFLANSVLKE VLIAIQKGKP GAFSPGRPAE FLKNYKSSLG FLAILEGYCP SRSAVVKFRS
401: EVVYMDFIRQ WNVGVYFSLR FQEIAGALDS ALMASSINPV DIQGKPHKLT MKQSITLMES LKSCWSDDVL ILSHSDKFLR LTLQLVSRYS SWLSHGLSAR
501: KARSASSRPV QNSEWSISAQ VEDFIYVMHD VTFLGSELSG VFLGQVIQVL GSCSDEVVDL VRQSILQAGK NLEDLLPAIM DTMVEAIVEK SVEDLRQLKG
601: VTATYRLTNK LPVIPSQYVS LILRPLKAFL DGEHIKLLMK DARNELLHGV TEKITTRYYE LAADTVNVAR KTESSLLRLR QGAQRRVGAT SDSVDNNISD
701: TEKICMQLFL DVQEYGRNLS AMGIEASEIS AYRSLWQCVA PEDRQSQITL
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.