Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 4
- plastid 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr1P00650_001 | |
| GSMUA_Achr3P32460_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G31780.1 | GSMUA_Achr11P... | AT3G48150.1 | 21798944 |
| AT1G31780.1 | GSMUA_Achr1P00650_001 | AT3G60150.1 | 21798944 |
| AT1G31780.1 | GSMUA_Achr3P32460_001 | AT5G11980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92971 | Sorghum | mitochondrion | 72.79 | 74.49 |
| TraesCS4D01G248500.1 | Wheat | mitochondrion | 73.08 | 74.46 |
| KRH76471 | Soybean | cytosol, mitochondrion, nucleus | 45.16 | 74.24 |
| HORVU4Hr1G066300.1 | Barley | mitochondrion | 72.79 | 74.17 |
| TraesCS4A01G062100.1 | Wheat | mitochondrion | 72.51 | 73.88 |
| TraesCS4B01G238800.2 | Wheat | mitochondrion | 72.51 | 73.88 |
| VIT_02s0012g00920.t01 | Wine grape | mitochondrion | 70.94 | 72.17 |
| KRH28986 | Soybean | cytosol, mitochondrion, nucleus | 71.08 | 72.01 |
| Zm00001d028279_P001 | Maize | mitochondrion | 72.51 | 71.99 |
| Solyc08g075440.2.1 | Tomato | plastid | 67.95 | 69.03 |
| AT1G31780.1 | Thale cress | cytosol | 66.67 | 68.82 |
| Bra023203.1-P | Field mustard | plastid | 66.1 | 68.14 |
| CDY12296 | Canola | plastid | 66.1 | 68.14 |
| CDY49154 | Canola | plastid | 66.1 | 68.14 |
| PGSC0003DMT400004938 | Potato | cytosol | 48.29 | 66.6 |
| Os03t0225600-01 | Rice | cytosol | 10.4 | 64.04 |
| KRG90345 | Soybean | cytosol | 5.98 | 63.64 |
| Zm00001d048022_P001 | Maize | cytosol | 7.41 | 47.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P14460_001 | EnsemblPlants:GSMUA_Achr8T14460_001 | EnsemblPlantsGene:GSMUA_Achr8G14460_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 |
| GO:GO:0017119 | InterPro:COG6 | PANTHER:PTHR21506 | PFAM:PF06419 | SEG:seg | SMART:SM01087 |
| UniParc:UPI000295745D | UniProt:M0TQE9 | MapMan:22.6.2.6 | : | : | : |
Description
Putative Conserved oligomeric Golgi complex subunit 6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G14460_001]
Coordinates
chr8:+:11579233..11600285
Molecular Weight (calculated)
78050.7 Da
IEP (calculated)
5.202
GRAVY (calculated)
-0.127
Length
702 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTALAPGL SRKLKKVLET RTDSPDLLSS LATLSTFYAD NTPQARRNLK SSIEQRALAI NHHFLDASLA AQQASISRYS LLLFFALDTV EEEVNALAEC
101: CDQIAKALSG CSESTGDIIS TTERLKQELE LTTQRQEIVS CFLRDYQLSN DEINALREEE LGENFFKALV HVQEIHANCK ILLRTHHQRA GLELMDMMSV
201: YQEGAYERLC RWVQAECKKL GDTDNPEVSD LLKTAICCLK ERPVLFKYCA EEIANMRHHA LFRRFISALT RGGPGGLPRP IEVHAHDPLR YVGDMLGWLH
301: QALASERELV LVLLDTDANS DADSIVHHFS KSSESDHTKF EPEITFVLDR IFEGACRPFK IRVEQVLQSQ PSLIISYKLS NTLEFYSHTI SDLLGRETAL
401: CNTLWLLKDA AQQTFFNILK GRGEKLLRYP PLVAVDLSPP PAVREGVSLL LDLIDTDNSM MVPASVKKPD FDPVITALLD PIVQMCEQAA EALKSKGVLS
501: KRSRTSSDLG SSSRDSLTFD AMLSKKTSTL TQGAEMSSTI YLINCLSAIQ QALVDQGVAA NYVDKITSDI DTNVSILVQM EVDAILTRCG LLSKISYIQN
601: STSEVDSEPG PLAQAPEMSP LVLSESLRTF FGLVTGTEGL LPEFEQLQLP RLRSDASIRV ARALADGYEL LYKAVVDPKN KYPDPRSLVR HSPDQIKTIL
701: EI
101: CDQIAKALSG CSESTGDIIS TTERLKQELE LTTQRQEIVS CFLRDYQLSN DEINALREEE LGENFFKALV HVQEIHANCK ILLRTHHQRA GLELMDMMSV
201: YQEGAYERLC RWVQAECKKL GDTDNPEVSD LLKTAICCLK ERPVLFKYCA EEIANMRHHA LFRRFISALT RGGPGGLPRP IEVHAHDPLR YVGDMLGWLH
301: QALASERELV LVLLDTDANS DADSIVHHFS KSSESDHTKF EPEITFVLDR IFEGACRPFK IRVEQVLQSQ PSLIISYKLS NTLEFYSHTI SDLLGRETAL
401: CNTLWLLKDA AQQTFFNILK GRGEKLLRYP PLVAVDLSPP PAVREGVSLL LDLIDTDNSM MVPASVKKPD FDPVITALLD PIVQMCEQAA EALKSKGVLS
501: KRSRTSSDLG SSSRDSLTFD AMLSKKTSTL TQGAEMSSTI YLINCLSAIQ QALVDQGVAA NYVDKITSDI DTNVSILVQM EVDAILTRCG LLSKISYIQN
601: STSEVDSEPG PLAQAPEMSP LVLSESLRTF FGLVTGTEGL LPEFEQLQLP RLRSDASIRV ARALADGYEL LYKAVVDPKN KYPDPRSLVR HSPDQIKTIL
701: EI
001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
Arabidopsis Description
At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.