Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023203.1-P | Field mustard | plastid | 94.56 | 94.42 |
| CDY49154 | Canola | plastid | 94.41 | 94.27 |
| CDY12296 | Canola | plastid | 94.12 | 93.98 |
| VIT_02s0012g00920.t01 | Wine grape | mitochondrion | 76.76 | 75.65 |
| KRH28986 | Soybean | cytosol, mitochondrion, nucleus | 75.44 | 74.03 |
| KRH76471 | Soybean | cytosol, mitochondrion, nucleus | 45.88 | 73.07 |
| Solyc08g075440.2.1 | Tomato | plastid | 73.82 | 72.65 |
| PGSC0003DMT400004938 | Potato | cytosol | 54.26 | 72.5 |
| OQU92971 | Sorghum | mitochondrion | 70.29 | 69.68 |
| TraesCS4D01G248500.1 | Wheat | mitochondrion | 70.29 | 69.38 |
| TraesCS4A01G062100.1 | Wheat | mitochondrion | 70.15 | 69.23 |
| HORVU4Hr1G066300.1 | Barley | mitochondrion | 70.0 | 69.09 |
| TraesCS4B01G238800.2 | Wheat | mitochondrion | 70.0 | 69.09 |
| Zm00001d028279_P001 | Maize | mitochondrion | 69.71 | 67.04 |
| GSMUA_Achr8P14460_001 | Banana | mitochondrion | 68.82 | 66.67 |
| KRG90345 | Soybean | cytosol | 6.03 | 62.12 |
| Os03t0225600-01 | Rice | cytosol | 9.85 | 58.77 |
| Zm00001d048022_P001 | Maize | cytosol | 7.79 | 48.62 |
Protein Annotations
| MapMan:22.6.2.6 | EntrezGene:840065 | ProteinID:AEE31392.1 | EMBL:AK226330 | ArrayExpress:AT1G31780 | EnsemblPlantsGene:AT1G31780 |
| RefSeq:AT1G31780 | TAIR:AT1G31780 | RefSeq:AT1G31780-TAIR-G | EnsemblPlants:AT1G31780.1 | TAIR:AT1G31780.1 | Unigene:At.23773 |
| EMBL:BT011677 | InterPro:COG6 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0017119 |
| RefSeq:NP_174458.2 | PFAM:PF06419 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR21506 | UniProt:Q6NMI3 | SMART:SM01087 | UniParc:UPI00002537D4 | SEG:seg | : |
Description
At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
Coordinates
chr1:+:11391199..11394748
Molecular Weight (calculated)
75796.6 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.264
Length
680 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.