Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28986 | Soybean | cytosol, mitochondrion, nucleus | 81.16 | 80.81 |
| Solyc08g075440.2.1 | Tomato | plastid | 79.42 | 79.31 |
| PGSC0003DMT400004938 | Potato | cytosol | 58.41 | 79.17 |
| KRH76471 | Soybean | cytosol, mitochondrion, nucleus | 48.41 | 78.22 |
| AT1G31780.1 | Thale cress | cytosol | 75.65 | 76.76 |
| Bra023203.1-P | Field mustard | plastid | 73.62 | 74.6 |
| CDY49154 | Canola | plastid | 73.62 | 74.6 |
| CDY12296 | Canola | plastid | 73.19 | 74.16 |
| GSMUA_Achr8P14460_001 | Banana | mitochondrion | 72.17 | 70.94 |
| TraesCS4D01G248500.1 | Wheat | mitochondrion | 70.43 | 70.54 |
| TraesCS4B01G238800.2 | Wheat | mitochondrion | 70.43 | 70.54 |
| TraesCS4A01G062100.1 | Wheat | mitochondrion | 70.14 | 70.25 |
| OQU92971 | Sorghum | mitochondrion | 69.57 | 69.97 |
| HORVU4Hr1G066300.1 | Barley | mitochondrion | 69.86 | 69.96 |
| Zm00001d028279_P001 | Maize | mitochondrion | 69.42 | 67.75 |
| KRG90345 | Soybean | cytosol | 6.38 | 66.67 |
| Os03t0225600-01 | Rice | cytosol | 9.71 | 58.77 |
| Zm00001d048022_P001 | Maize | cytosol | 7.83 | 49.54 |
Protein Annotations
| EntrezGene:100255670 | wikigene:100255670 | MapMan:22.6.2.6 | ProteinID:CBI33915 | ProteinID:CBI33915.3 | InterPro:COG6 |
| UniProt:D7TU00 | EMBL:FN596247 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0017119 | EntrezGene:LOC100255670 |
| wikigene:LOC100255670 | PFAM:PF06419 | PANTHER:PTHR21506 | SMART:SM01087 | UniParc:UPI00015C90E0 | ArrayExpress:VIT_02s0012g00920 |
| EnsemblPlantsGene:VIT_02s0012g00920 | EnsemblPlants:VIT_02s0012g00920.t01 | unigene:Vvi.12041 | RefSeq:XP_002281271 | RefSeq:XP_002281271.1 | SEG:seg |
Description
No Description!
Coordinates
chr2:-:6835432..6855358
Molecular Weight (calculated)
77123.7 Da
IEP (calculated)
6.059
GRAVY (calculated)
-0.219
Length
690 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVGVAPGL SRKLKKVLES RTDSPDLLAS LNTLSTFYTE NTQHARRNLR STIEKRCLSI NHDFLRASDA AQQALDCVEE EVNALADCCD RIAKALNSCN
101: ATTGDIISTT ERLKQELEIT TQRQEIASCF LRDYQLSNEE ISALREEDLN ENFFKALSHV QEIHANCKIL LRTHHQRAGL ELMDMMAVYQ EGAYERLCRW
201: VQAECRRLGD SDNPEVSELL KTAVRCLKER PVLFNYCAEE VANMRHNALF RRFISALTRG GPGELPRPIE VHAHDPLRYV GDMLGWLHQA LASERELVLA
301: LLDPDAAVDT EPTAQRLSKI SESDGGKMES DLKFVLDRIF EGVCRPFKVR VEQVLQSQPN LIIAYKLSNT LEFYCYTISD LLGRETSLCN TLWLLKDAAQ
401: KTFFDILKSR GEKLLRYPPL VAVDLSPPAA LREGVSVLLE IIETHDSMMI PASEKKPAFD PVISALLDPI IQMCEQAAEA HKSKGVTHSS RRSRASTESG
501: QMSKSSFDAI LSNSGSTLFS QDSETPSKIF LINCLCAIQQ PLLGHEIASE YVKKLGAMID NHMNILVEKQ VDAILRRCGL SNKMPHFRNS FNKAVVEAPL
601: AEMEDTSPAS LSECLKAFFG LILGSESSLP EFEQMQVPKL RADACLQVAK LLAEAYQLIY SAIMDPKNGY PDPKSLARHP PHQIQTILGI
101: ATTGDIISTT ERLKQELEIT TQRQEIASCF LRDYQLSNEE ISALREEDLN ENFFKALSHV QEIHANCKIL LRTHHQRAGL ELMDMMAVYQ EGAYERLCRW
201: VQAECRRLGD SDNPEVSELL KTAVRCLKER PVLFNYCAEE VANMRHNALF RRFISALTRG GPGELPRPIE VHAHDPLRYV GDMLGWLHQA LASERELVLA
301: LLDPDAAVDT EPTAQRLSKI SESDGGKMES DLKFVLDRIF EGVCRPFKVR VEQVLQSQPN LIIAYKLSNT LEFYCYTISD LLGRETSLCN TLWLLKDAAQ
401: KTFFDILKSR GEKLLRYPPL VAVDLSPPAA LREGVSVLLE IIETHDSMMI PASEKKPAFD PVISALLDPI IQMCEQAAEA HKSKGVTHSS RRSRASTESG
501: QMSKSSFDAI LSNSGSTLFS QDSETPSKIF LINCLCAIQQ PLLGHEIASE YVKKLGAMID NHMNILVEKQ VDAILRRCGL SNKMPHFRNS FNKAVVEAPL
601: AEMEDTSPAS LSECLKAFFG LILGSESSLP EFEQMQVPKL RADACLQVAK LLAEAYQLIY SAIMDPKNGY PDPKSLARHP PHQIQTILGI
001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
Arabidopsis Description
At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.