Factsheet for VIT_07s0130g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_00s0238g00110.t01
VIT_00s0333g00060.t01
VIT_01s0026g02730.t01
VIT_02s0012g02000.t01
VIT_03s0038g00880.t01
VIT_03s0038g02110.t01
VIT_03s0091g00480.t01
VIT_04s0023g03230.t01
VIT_04s0023g03470.t01
VIT_04s0043g00340.t01
VIT_05s0020g01720.t01
VIT_05s0020g03180.t01
VIT_05s0077g02340.t01
VIT_05s0102g00080.t01
VIT_06s0004g07940.t01
VIT_07s0151g01000.t01
VIT_08s0007g07790.t01
VIT_11s0016g00830.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_13s0067g02700.t01
VIT_15s0021g00250.t01
VIT_17s0000g10250.t01
VIT_17s0053g00580.t01
VIT_18s0001g02100.t01
VIT_18s0041g01150.t01
VIT_18s0041g01190.t01
VIT_18s0041g01220.t01
VIT_18s0075g00250.t01
VIT_18s0075g00270.t01
VIT_19s0014g01170.t01
VIT_19s0014g02890.t01
VIT_19s0015g01370.t01
VIT_19s0177g00260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48150.1	VIT_05s0020g03180.t01	AT1G03130.1	21798944
AT3G48150.1	VIT_07s0151g01000.t01	AT1G03130.1	21798944
AT3G48150.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT3G48150.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT3G48150.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT3G48150.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT3G48150.1	VIT_18s0075g00250.t01	AT1G71970.1	21798944
AT3G48150.1	VIT_18s0075g00270.t01	AT1G71970.1	21798944
AT3G48150.1	VIT_18s0041g01150.t01	AT1G72030.1	21798944
AT3G48150.1	VIT_18s0041g01190.t01	AT1G72030.1	21798944
AT3G48150.1	VIT_18s0041g01220.t01	AT1G72030.1	21798944
AT3G48150.1	VIT_18s0001g02100.t01	AT1G77400.1	21798944
AT3G48150.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT3G48150.1	VIT_01s0026g02730.t01	AT2G04660.1	14508008
AT3G48150.1	VIT_11s0016g00830.t01	AT2G05830.1	20706207
AT3G48150.1	VIT_17s0053g00580.t01	AT2G05830.1	20706207
AT3G48150.1	VIT_03s0038g02110.t01	AT2G17880.1	21798944
AT3G48150.1	VIT_04s0023g03470.t01	AT2G17880.1	21798944
AT3G48150.1	VIT_05s0020g01720.t01	AT2G39100.1	21798944
AT3G48150.1	VIT_06s0004g07940.t01	AT2G40590.1	21798944
AT3G48150.1	VIT_13s0067g02700.t01	AT2G40590.1	21798944
AT3G48150.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT3G48150.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT3G48150.1	VIT_19s0015g01370.t01	AT3G13310.1	21798944
AT3G48150.1	VIT_19s0177g00260.t01	AT3G15160.1	21798944
AT3G48150.1	VIT_00s0238g00110.t01	AT3G15360.1	21798944
AT3G48150.1	VIT_19s0014g02890.t01	AT3G15360.1	21798944
AT3G48150.1	VIT_15s0021g00250.t01	AT3G17668.1	21798944
AT3G48150.1	VIT_05s0077g02340.t01	AT3G62790.1	21798944
AT3G48150.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT3G48150.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT3G48150.1	VIT_17s0000g10250.t01	AT4G24820.1	20706207
AT3G48150.1	VIT_03s0038g00880.t01	AT4G34740.1	21798944
AT3G48150.1	VIT_04s0023g03230.t01	AT4G36110.1	21798944
AT3G48150.1	VIT_04s0043g00340.t01	AT5G16560.1	21798944
AT3G48150.1	VIT_00s0333g00060.t01	AT5G48500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g02330.t01	Wine grape	cytosol	94.63	94.63
KRH27971	Soybean	nucleus	87.35	87.35
KRH77487	Soybean	nucleus	87.17	87.02
PGSC0003DMT400063189	Potato	cytosol	80.76	85.66
Solyc03g113740.2.1	Tomato	cytosol, mitochondrion	85.27	85.42
KRH24006	Soybean	cytosol	82.84	81.15
AT3G48150.1	Thale cress	cytosol	79.38	79.1
Bra033769.1-P	Field mustard	nucleus	79.2	79.07
Bra018081.1-P	Field mustard	cytosol	78.34	78.07
CDY58070	Canola	cytosol	66.38	77.37
CDY70805	Canola	nucleus	40.21	77.08
CDY36901	Canola	cytosol	65.16	75.05
CDY44976	Canola	cytosol	65.16	74.46
GSMUA_Achr11P...	Banana	cytosol	74.18	70.86
CDY58069	Canola	nucleus	53.73	69.51
Os02t0656300-01	Rice	cytosol	71.4	69.01
TraesCS6A01G251400.1	Wheat	cytosol	71.4	68.78
TraesCS6B01G273900.1	Wheat	cytosol	71.4	68.78
TraesCS6D01G233200.1	Wheat	cytosol	71.23	68.61
EES07517	Sorghum	cytosol	71.23	68.5
Zm00001d017475_P002	Maize	cytosol	71.06	68.45
KRH29310	Soybean	cytosol	36.22	65.31
HORVU6Hr1G062870.1	Barley	cytosol, plastid	71.06	63.17
HORVU0Hr1G027080.4	Barley	plastid	65.68	63.17
Os06t0679100-00	Rice	plastid	16.29	52.81
VIT_11s0016g03260.t01	Wine grape	cytosol	18.54	14.06

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100249407	wikigene:100249407	MapMan:13.3.4.1.1.2.4	EMBL:AM462158	InterPro:APC8
ProteinID:CAN83330	ProteinID:CAN83330.1	ProteinID:CCB51353	ProteinID:CCB51353.1	ncoils:Coil	UniProt:F6HGK7
EMBL:FN595755	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0030071	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100249407
wikigene:LOC100249407	PFAM:PF04049	PFAM:PF13181	PFAM:PF13414	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR12558	PANTHER:PTHR12558:SF10	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00015CD4E6	ArrayExpress:VIT_07s0130g00490	EnsemblPlantsGene:VIT_07s0130g00490	EnsemblPlants:VIT_07s0130g00490.t01	RefSeq:XP_002266966
RefSeq:XP_002266966.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:20979092..20984176

Molecular Weight (calculated)

67274.0 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.494

Length

577 amino acids

Sequence
(BLAST)

001: MSSKDSCRNE LRFAIRQLSD RCLYSAAKWA AEQLVGIEQD PAKFTPSHTR FQRGSSSIRR RFRTNEIAST PTAGVSYVST PVLEEDEAVD GDFYLLAKSY
101: FDCREYRRTA HVLRDQTGKK AVFLRCYALY LAGEKRKEEE MIELEGPLGK SDAVNHELVS LERELSTLRK NGTVDPFGLY LYGLVLKEKG SENLARTVLV
201: ESVNSYPWNW NAWTELQSLC TTIDILNSLN LNNHWMKDFF LASVYQELRM HNESLGKYEY LQGTFSFSNY IQAQIAKAQY SLREFEQVEI IFDELLRNDP
301: YRVEDMDMYS NVLYAKECFS ALSYLAHRVF LTDKYRPESC CIIGNYYSLK GQHEKSVVYF RRALKLNKNY LSAWTLMGHE YVEMKNTPAA VDAYRRAVDI
401: NPCDYRAWYG LGQAYEMMFM PYYALHYFRK SVFLQPNDSR LWIAMAQCYE TDQLQMLEDA IKCYKRAANC NDTEAIALHQ LAKLSKELKR SEEAAFYYKK
501: DLERMEAEER EGPNMVEALL FLATYYKSQK RFEEAEIYCT RLLDYTGPEK ETAKSLLRGM RKAQSGFPSM DIEHLPP

Best Arabidopsis Sequence Match ( AT3G48150.1 )
(BLAST)

001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI

Arabidopsis Description

APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.