Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0066g01280.t01 | |
| VIT_16s0022g00510.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | VIT_14s0066g01280.t01 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55312 | Soybean | nucleus, plastid | 83.1 | 34.91 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 90.14 | 34.04 |
| VIT_12s0028g03850.t01 | Wine grape | cytosol | 63.38 | 32.85 |
| KRH26086 | Soybean | plastid | 80.28 | 32.57 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 64.79 | 32.39 |
| KRH22105 | Soybean | plastid | 78.87 | 30.77 |
| KRH27229 | Soybean | plastid | 78.87 | 30.77 |
| Solyc07g063190.2.1 | Tomato | plastid | 76.06 | 29.67 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 76.06 | 29.67 |
| Solyc12g013810.1.1 | Tomato | plastid | 69.01 | 27.37 |
| PGSC0003DMT400039743 | Potato | plastid | 69.01 | 27.37 |
| PGSC0003DMT400064434 | Potato | plastid | 71.83 | 27.27 |
| Solyc10g006970.2.1 | Tomato | plastid | 71.83 | 27.27 |
| Zm00001d017379_P001 | Maize | plastid | 64.79 | 26.59 |
| EES07212 | Sorghum | plastid | 64.79 | 26.44 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 69.01 | 26.06 |
| Os02t0639900-01 | Rice | plastid | 63.38 | 26.01 |
| Zm00001d051250_P001 | Maize | plastid | 63.38 | 26.01 |
| GSMUA_Achr11P... | Banana | plastid | 66.2 | 25.82 |
| CDX82437 | Canola | endoplasmic reticulum | 45.07 | 25.4 |
| TraesCS2D01G368700.1 | Wheat | plastid | 64.79 | 25.27 |
| CDX75826 | Canola | endoplasmic reticulum | 45.07 | 25.2 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 57.75 | 25.15 |
| VIT_18s0001g15310.t01 | Wine grape | plastid | 64.79 | 25.14 |
| Os04t0530600-01 | Rice | plastid | 63.38 | 25.0 |
| TraesCS2A01G372500.1 | Wheat | plastid | 64.79 | 25.0 |
| TraesCS2B01G389500.1 | Wheat | plastid | 64.79 | 24.86 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 64.79 | 24.86 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 66.2 | 24.74 |
| Zm00001d002854_P001 | Maize | plastid | 63.38 | 24.73 |
| CDX97662 | Canola | plastid | 63.38 | 23.44 |
| Bra027250.1-P | Field mustard | plastid | 63.38 | 23.44 |
| AT3G15360.1 | Thale cress | plastid | 63.38 | 23.32 |
| EES12552 | Sorghum | plastid | 60.56 | 23.12 |
| CDX98554 | Canola | plastid | 61.97 | 22.92 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 66.2 | 19.83 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 67.61 | 19.51 |
| VIT_10s0042g00430.t01 | Wine grape | cytosol | 22.54 | 18.82 |
| VIT_03s0063g00280.t01 | Wine grape | plastid | 40.85 | 16.86 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 33.8 | 13.71 |
| VIT_10s0042g00200.t01 | Wine grape | plastid | 26.76 | 10.8 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | ProteinID:CCB62843 | ProteinID:CCB62843.1 | UniProt:F6I7C5 | EMBL:FN596774 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 | GO:GO:0045454 | GO:GO:0047134 |
| GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | PFAM:PF00085 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF367 |
| SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0002108F00 | ArrayExpress:VIT_00s0238g00110 |
| EnsemblPlantsGene:VIT_00s0238g00110 | EnsemblPlants:VIT_00s0238g00110.t01 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:16298092..16298497
Molecular Weight (calculated)
7861.9 Da
IEP (calculated)
10.422
GRAVY (calculated)
0.030
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MIHPIINELA KQCIGKLKCY KVNTDESPSI ATRYGIRSIP TVIIFKSREK KEAVIGAIPK STLTTSIGKF L
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Arabidopsis Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.