Factsheet for GSMUA_Achr5P12100_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT3G15360.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT3G15360.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00150_001	Banana	plastid	56.5	73.94
GSMUA_Achr11P...	Banana	plastid	51.22	69.23
HORVU2Hr1G091130.1	Barley	mitochondrion	39.43	68.31
VIT_00s0238g00110.t01	Wine grape	cytosol	19.51	67.61
GSMUA_Achr5P20730_001	Banana	plastid	48.78	63.16
Zm00001d017379_P001	Maize	plastid	43.5	61.85
KRH55312	Soybean	nucleus, plastid	42.28	61.54
Zm00001d051250_P001	Maize	plastid	42.68	60.69
KRH26086	Soybean	plastid	43.09	60.57
Zm00001d002854_P001	Maize	plastid	44.72	60.44
EES07212	Sorghum	plastid	42.68	60.34
Os02t0639900-01	Rice	plastid	42.28	60.12
Os04t0530600-01	Rice	plastid	43.9	60.0
TraesCS2D01G368700.1	Wheat	plastid	43.09	58.24
GSMUA_Achr4P29990_001	Banana	plastid	56.1	58.23
TraesCS2A01G372500.1	Wheat	plastid	43.5	58.15
EES12552	Sorghum	plastid	43.5	57.53
VIT_19s0014g02890.t01	Wine grape	plastid	43.9	57.45
TraesCS2B01G389500.1	Wheat	plastid	42.68	56.76
KRH22105	Soybean	plastid	41.46	56.04
KRH27229	Soybean	plastid	39.84	53.85
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	39.43	53.3
Solyc07g063190.2.1	Tomato	plastid	39.02	52.75
HORVU2Hr1G091200.5	Barley	cytosol	39.43	52.43
PGSC0003DMT400064434	Potato	plastid	39.02	51.34
Solyc10g006970.2.1	Tomato	plastid	38.62	50.8
PGSC0003DMT400039743	Potato	plastid	35.77	49.16
Solyc12g013810.1.1	Tomato	plastid	35.37	48.6
AT3G15360.1	Thale cress	plastid	34.15	43.52
Bra001592.1-P	Field mustard	extracellular, plasma membrane	28.46	42.94
CDX97662	Canola	plastid	33.33	42.71
Bra027250.1-P	Field mustard	plastid	33.33	42.71
GSMUA_Achr3P02940_001	Banana	extracellular	19.92	42.61
CDX98554	Canola	plastid	32.93	42.19
GSMUA_Achr11P...	Banana	plastid	29.27	39.34
GSMUA_Achr11P...	Banana	cytosol	11.38	38.36
CDX75826	Canola	endoplasmic reticulum	18.7	36.22
CDX82437	Canola	endoplasmic reticulum	18.29	35.71
GSMUA_Achr2P03790_001	Banana	plastid	19.92	27.53
GSMUA_Achr6P25720_001	Banana	plastid	15.45	22.35
GSMUA_Achr1P13230_001	Banana	extracellular	12.2	22.22

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G12100_001	EnsemblPlants:GSMUA_Achr5P12100_001	EnsemblPlants:GSMUA_Achr5T12100_001	InterPro:IPR013766
UniProt:M0SXT9	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002952EF2	SEG:seg	:	:	:

Description

Thioredoxin M1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G12100_001]

Coordinates

chr5:-:8748915..8753282

Molecular Weight (calculated)

26639.3 Da

IEP (calculated)

9.778

GRAVY (calculated)

0.107

Length

246 amino acids

Sequence
(BLAST)

001: MVVYQKPFIS YFLSSRSSHS CVSFIHPSPN HESPSQLSYT YFAARHADPS TAQAAAATSP VVMAATVIQS FAVPCRSRAA APRASASFSS PLGRRALGLL
101: PQFSGLRCAS VPLKVKLAAV AARSRVVRRG AVVCEVQETA VQLPDVTKAT WQSLVLDSSV PVLIDFWAPW CGPCRMIEPT VAKLAKVYEG KLKCYKLNTD
201: ENPDIATQYG IRSIPTMMIF KNGEKKDTVI GAVPESTLVT SIEKFV

Best Arabidopsis Sequence Match ( AT1G03680.1 )
(BLAST)

001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL

Arabidopsis Description

ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.