Factsheet for GSMUA_Achr2P03790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P02970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	GSMUA_Achr3P02970_001	AT3G11630.1	25448674
AT1G50320.1	GSMUA_Achr3P02970_001	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00430.t01	Wine grape	cytosol	30.9	64.71
Zm00001d026608_P001	Maize	plastid	58.43	59.43
EES11645	Sorghum	plastid	57.87	58.86
Zm00001d001843_P001	Maize	plastid	57.3	57.63
Os04t0676100-01	Rice	extracellular, plastid	57.87	57.22
TraesCS2A01G555300.1	Wheat	plastid	52.81	54.65
TraesCS2D01G559200.1	Wheat	plastid	52.25	53.76
TraesCS2B01G588600.1	Wheat	plastid	51.69	52.57
VIT_10s0042g00200.t01	Wine grape	plastid	51.12	51.7
KRH36129	Soybean	plastid	50.56	51.14
KRG90625	Soybean	plastid	50.56	49.72
Solyc01g008250.2.1	Tomato	plastid	46.63	45.6
PGSC0003DMT400042164	Potato	cytosol, plastid	46.07	44.57
AT1G50320.1	Thale cress	plastid	45.51	44.51
CDY42508	Canola	plastid	44.38	43.89
Bra018842.1-P	Field mustard	plastid	44.38	43.41
CDY22789	Canola	plastid	43.82	42.86
GSMUA_Achr3P02940_001	Banana	extracellular	22.47	34.78
GSMUA_Achr1P13230_001	Banana	extracellular	20.22	26.67
GSMUA_Achr6P25720_001	Banana	plastid	25.28	26.47
GSMUA_Achr11P...	Banana	cytosol	10.67	26.03
GSMUA_Achr1P00150_001	Banana	plastid	26.97	25.53
GSMUA_Achr5P20730_001	Banana	plastid	26.97	25.26
GSMUA_Achr11P...	Banana	plastid	25.28	24.59
GSMUA_Achr11P...	Banana	plastid	23.6	23.08
GSMUA_Achr4P29990_001	Banana	plastid	26.97	20.25
GSMUA_Achr5P12100_001	Banana	plastid	27.53	19.92

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008047	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0030234	GO:GO:0043085	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G03790_001
EnsemblPlants:GSMUA_Achr2P03790_001	EnsemblPlants:GSMUA_Achr2T03790_001	InterPro:IPR013766	UniProt:M0S4X0	PFAM:PF00085	PRINTS:PR00421
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI000296B532	SEG:seg	:	:	:

Description

Thioredoxin X, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G03790_001]

Coordinates

chr2:+:9403106..9406348

Molecular Weight (calculated)

19722.9 Da

IEP (calculated)

10.015

GRAVY (calculated)

-0.107

Length

178 amino acids

Sequence
(BLAST)

001: MATTSFSPSA AVRAPSASSF GPHLDLSRRI RLPLTRPPAP AARWGARRHV APFRLAARRL SVRCGALVQI DQSEFPAEVL GSDIPVLVEF VADWCGPCRL
101: ISSVVEWASQ EYKGRVKVVK IDHDANPKLI TEYKVYGLPT LILFKNGQEV PESRREGAIT KVKLKEYLDN FLEPTSVV

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.