CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73858
CDX73860
CDY01041
CDY08508
CDY56598
CDY67317
CDY67795

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	CDX73858	AT3G11630.1	25448674
AT1G50320.1	CDX73860	AT3G11630.1	25448674
AT1G50320.1	CDY01041	AT3G11630.1	25448674
AT1G50320.1	CDY08508	AT3G11630.1	25448674
AT1G50320.1	CDY56598	AT3G11630.1	25448674
AT1G50320.1	CDY67317	AT5G06290.1	25448674
AT1G50320.1	CDY67795	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018842.1-P	Field mustard	plastid	97.8	97.8
CDY42508	Canola	plastid	93.96	95.0
AT1G50320.1	Thale cress	plastid	78.02	78.02
VIT_10s0042g00430.t01	Wine grape	cytosol	31.87	68.24
VIT_10s0042g00200.t01	Wine grape	plastid	52.75	54.55
KRH36129	Soybean	plastid	50.0	51.7
KRG90625	Soybean	plastid	51.1	51.38
Solyc01g008250.2.1	Tomato	plastid	50.55	50.55
PGSC0003DMT400042164	Potato	cytosol, plastid	49.45	48.91
Os04t0676100-01	Rice	extracellular, plastid	47.8	48.33
TraesCS2B01G588600.1	Wheat	plastid	45.6	47.43
TraesCS2D01G559200.1	Wheat	plastid	45.05	47.4
TraesCS2A01G555300.1	Wheat	plastid	43.96	46.51
Zm00001d001843_P001	Maize	plastid	45.05	46.33
EES11645	Sorghum	plastid	43.41	45.14
Zm00001d026608_P001	Maize	plastid	42.86	44.57
GSMUA_Achr2P03790_001	Banana	plastid	42.86	43.82
CDY14949	Canola	cytosol	24.18	38.26
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	25.27	29.11
CDX97662	Canola	plastid	28.57	27.08
CDX88314	Canola	plastid	24.73	26.16
CDX98554	Canola	plastid	27.47	26.04
CDX87569	Canola	plastid	24.18	25.58
CDY37416	Canola	plastid	25.27	25.41
CDY21971	Canola	plastid	24.73	24.59
CDY61995	Canola	plastid	23.63	23.89
CDY48214	Canola	plastid	23.08	23.33
CDY48565	Canola	plastid	23.63	23.12
CDX68513	Canola	plastid	21.43	22.81
CDY36637	Canola	plastid	21.43	22.81
CDY24127	Canola	cytosol	14.84	21.26
CDX82437	Canola	endoplasmic reticulum	13.19	19.05
CDX75826	Canola	endoplasmic reticulum	13.19	18.9
CDY65035	Canola	cytosol	13.19	18.18
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	12.09	16.06
CDY32507	Canola	plastid	23.08	12.54

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	GO:A0A078GBR7	UniProt:A0A078GBR7	EnsemblPlants:CDY22789	ProteinID:CDY22789
ProteinID:CDY22789.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00021129001	InterPro:IPR013766	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EE2B28
SEG:seg	:	:	:	:	:

Description

BnaA06g02880DBnaA06g02880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBR7]

Coordinates

chrLK032136:-:35933..36886

Molecular Weight (calculated)

19637.6 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.012

Length

182 amino acids

Sequence
(BLAST)

001: MDCIVSSSTV LIRSHLTPIR SASSVSAKPL SSAKVASFAS NRHILSFKSG GKRIRTLSTN ASSSTIRCGG IKEIGESEFT STVLESDRPV LVNFVATWCG
101: PCKLVYPATE ALSQEYGDRL TIVKIDHDAN PNLIAEYKVY GLPHFILFKD GKEVAGSRRE GAITKAKLKE YIDGLLTSIS VA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.