Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019005.1-P | Field mustard | extracellular | 97.64 | 89.86 |
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 48.03 | 38.61 |
| CDY65035 | Canola | cytosol | 37.01 | 35.61 |
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 36.22 | 33.58 |
| AT4G12170.1 | Thale cress | extracellular | 39.37 | 32.68 |
| CDY14949 | Canola | cytosol | 18.9 | 20.87 |
| CDX97662 | Canola | plastid | 29.13 | 19.27 |
| CDX98554 | Canola | plastid | 29.13 | 19.27 |
| CDY21971 | Canola | plastid | 27.56 | 19.13 |
| CDY61995 | Canola | plastid | 25.98 | 18.33 |
| CDY48214 | Canola | plastid | 25.98 | 18.33 |
| CDY48565 | Canola | plastid | 26.77 | 18.28 |
| CDX82437 | Canola | endoplasmic reticulum | 18.11 | 18.25 |
| CDY37416 | Canola | plastid | 25.98 | 18.23 |
| CDY36637 | Canola | plastid | 21.26 | 15.79 |
| CDX68513 | Canola | plastid | 21.26 | 15.79 |
| CDX75826 | Canola | endoplasmic reticulum | 15.75 | 15.75 |
| CDY42508 | Canola | plastid | 21.26 | 15.0 |
| CDY22789 | Canola | plastid | 21.26 | 14.84 |
| CDX88314 | Canola | plastid | 19.68 | 14.53 |
| CDX87569 | Canola | plastid | 19.68 | 14.53 |
| CDY32507 | Canola | plastid | 25.98 | 9.85 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.2 | GO:A0A078GG54 | UniProt:A0A078GG54 | EnsemblPlants:CDY24127 | ProteinID:CDY24127 |
| ProteinID:CDY24127.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00024681001 | InterPro:IPR013766 | PFAM:PF00085 |
| PANTHER:PTHR10438 | PANTHER:PTHR10438:SF356 | SUPFAM:SSF52833 | TMHMM:TMhelix | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI0004EE1198 | SEG:seg | : | : | : |
Description
BnaA06g01250DBnaA06g01250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG54]
Coordinates
chrLK032153:+:606171..606715
Molecular Weight (calculated)
14427.5 Da
IEP (calculated)
4.439
GRAVY (calculated)
0.144
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSESDALIK TYVSSSLHSD DLLIHEVTKS DWDSLVMESK VPVMVLFTAY LCPTCFIMSF NMDTLDLKFA GRFKFYSVDL DDEPEIGARW GVLTCPTTVV
101: FKLGKVMDKR TGFLNEATQM DIVEKYI
101: FKLGKVMDKR TGFLNEATQM DIVEKYI
001: MEQIRGLYHL VVTVTCLVCL GFNVSMCSGS DSDPFIKAYV SSSLPSHDGL VQSLSASEWN SLVIQSKVPV IVVFIAKDCA ECGSLMPELE FLDSEYEYML
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
Arabidopsis Description
Thioredoxin superfamily protein [Source:TAIR;Acc:AT4G12170]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.