Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03520.1 | CDX91687 | AT1G22640.1 | 21798944 |
| AT4G03520.1 | CDY04798 | AT1G22640.1 | 21798944 |
| AT4G03520.1 | CDY12520 | AT1G22640.1 | 21798944 |
| AT4G03520.1 | CDY21378 | AT1G22640.1 | 21798944 |
| AT4G03520.1 | CDY25747 | AT1G22640.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034214.1-P | Field mustard | plastid | 96.17 | 95.65 |
| CDY48565 | Canola | plastid | 96.72 | 95.16 |
| CDY61995 | Canola | plastid | 83.06 | 84.44 |
| CDY48214 | Canola | plastid | 82.51 | 83.89 |
| AT4G03520.1 | Thale cress | plastid | 80.33 | 79.03 |
| CDY37416 | Canola | plastid | 71.04 | 71.82 |
| VIT_12s0028g03850.t01 | Wine grape | cytosol | 39.89 | 53.28 |
| PGSC0003DMT400055831 | Potato | mitochondrion, plastid | 47.54 | 47.54 |
| Solyc10g008390.2.1 | Tomato | plastid | 46.45 | 46.45 |
| CDX98554 | Canola | plastid | 43.17 | 41.15 |
| CDX97662 | Canola | plastid | 43.17 | 41.15 |
| HORVU7Hr1G119730.1 | Barley | endoplasmic reticulum | 26.23 | 38.1 |
| CDY32507 | Canola | plastid | 66.12 | 36.12 |
| CDX82437 | Canola | endoplasmic reticulum | 24.04 | 34.92 |
| CDY14949 | Canola | cytosol | 21.31 | 33.91 |
| CDX75826 | Canola | endoplasmic reticulum | 23.5 | 33.86 |
| KXG20981 | Sorghum | plastid | 31.69 | 33.14 |
| TraesCS7D01G547400.1 | Wheat | plastid | 27.87 | 29.65 |
| CDY36637 | Canola | plastid | 26.78 | 28.66 |
| CDX68513 | Canola | plastid | 26.78 | 28.66 |
| TraesCS7A01G563600.1 | Wheat | plastid | 27.87 | 28.49 |
| CDY24127 | Canola | cytosol | 19.13 | 27.56 |
| CDX88314 | Canola | plastid | 25.14 | 26.74 |
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 22.95 | 26.58 |
| CDX87569 | Canola | plastid | 24.59 | 26.16 |
| CDY42508 | Canola | plastid | 24.59 | 25.0 |
| CDY22789 | Canola | plastid | 24.59 | 24.73 |
| CDY65035 | Canola | cytosol | 16.39 | 22.73 |
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.75 | 19.71 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | GO:A0A078G9A1 | UniProt:A0A078G9A1 | EnsemblPlants:CDY21971 | ProteinID:CDY21971 |
| ProteinID:CDY21971.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00018306001 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF300 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0004EE9C99 | SEG:seg | : |
Description
BnaC09g00770DBnaC09g00770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9A1]
Coordinates
chrLK032126:-:430183..431728
Molecular Weight (calculated)
19895.9 Da
IEP (calculated)
8.314
GRAVY (calculated)
-0.055
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAFICTSL PPLSLRSETK AASSSLSSRR LFAVSPESGG LRIRLSQSPS SLTSIQPRAP RLRRGVVVCE AQETTTDIVS IVNDSTWDSL VLEADGPVLV
101: DFWAPWCGPC KMIDPLVNEL AQQYTGKVKF YKLNTDDSPS TPSKYNVRSI PTIMIFVDGE KKDAIIGAVP KSTLTSSIDK FLQ
101: DFWAPWCGPC KMIDPLVNEL AQQYTGKVKF YKLNTDDSPS TPSKYNVRSI PTIMIFVDGE KKDAIIGAVP KSTLTSSIDK FLQ
001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP
Arabidopsis Description
ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.