Factsheet for Solyc10g008390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	Solyc02g068050.2.1	AT5G14260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055831	Potato	mitochondrion, plastid	92.9	92.9
VIT_12s0028g03850.t01	Wine grape	cytosol	43.17	57.66
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	33.88	49.21
Solyc07g063190.2.1	Tomato	plastid	48.63	48.9
CDY48214	Canola	plastid	46.45	47.22
Bra034214.1-P	Field mustard	plastid	46.99	46.74
Bra000821.1-P	Field mustard	plastid	45.9	46.67
CDY61995	Canola	plastid	45.9	46.67
CDY21971	Canola	plastid	46.45	46.45
CDY48565	Canola	plastid	46.99	46.24
CDY37416	Canola	plastid	45.36	45.86
Solyc10g006970.2.1	Tomato	plastid	46.45	45.45
AT1G03680.1	Thale cress	plastid	43.72	44.69
Solyc12g013810.1.1	Tomato	plastid	43.72	44.69
AT4G03520.1	Thale cress	plastid	45.36	44.62
KXG20981	Sorghum	plastid	42.08	44.0
TraesCS7D01G547400.1	Wheat	plastid	39.34	41.86
TraesCS7A01G563600.1	Wheat	plastid	39.89	40.78
Solyc01g108020.2.1	Tomato	plastid	30.6	31.11
Solyc01g008250.2.1	Tomato	plastid	23.5	23.63
CDY32507	Canola	plastid	42.08	22.99
Bra032547.1-P	Field mustard	plastid	42.08	22.99
Solyc04g071560.2.1	Tomato	plastid	18.03	18.97

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4CY16
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc10g008390.2	EnsemblPlants:Solyc10g008390.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000276B7B9	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:2524682..2529183

Molecular Weight (calculated)

20192.1 Da

IEP (calculated)

8.642

GRAVY (calculated)

-0.027

Length

183 amino acids

Sequence
(BLAST)

001: MSTILDSVAI SSIFSSNLRR SLRPSPPFSA AWDRRAPLKF TGFSISYNPF DNQVSLTSSS RICRRTNSVS GEASDVVFDV PSVTEETWDS LVLNATEPVV
101: VEFWAPWCGP CRMFHPVISD LAKQYTGRVK CFKLNTDDSP SVASRYGIRS IPTIMIFVNG EKKDAIIGAV PKTSLTASID KFL

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.