Factsheet for PGSC0003DMT400055831

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017960

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	PGSC0003DMT400017960	AT5G14260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008390.2.1	Tomato	plastid	92.9	92.9
VIT_12s0028g03850.t01	Wine grape	cytosol	43.17	57.66
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	34.43	50.0
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	49.73	50.0
CDY48214	Canola	plastid	47.54	48.33
Bra034214.1-P	Field mustard	plastid	48.09	47.83
Bra000821.1-P	Field mustard	plastid	46.99	47.78
CDY61995	Canola	plastid	46.99	47.78
CDY21971	Canola	plastid	47.54	47.54
CDY48565	Canola	plastid	48.09	47.31
PGSC0003DMT400039743	Potato	plastid	44.81	45.81
AT4G03520.1	Thale cress	plastid	46.45	45.7
CDY37416	Canola	plastid	44.81	45.3
AT1G03680.1	Thale cress	plastid	44.26	45.25
KXG20981	Sorghum	plastid	42.62	44.57
PGSC0003DMT400064434	Potato	plastid	44.81	43.85
TraesCS7D01G547400.1	Wheat	plastid	40.44	43.02
TraesCS7A01G563600.1	Wheat	plastid	40.98	41.9
PGSC0003DMT400066596	Potato	plastid	30.05	30.56
PGSC0003DMT400042164	Potato	cytosol, plastid	23.5	23.37
Bra032547.1-P	Field mustard	plastid	42.08	22.99
CDY32507	Canola	plastid	42.08	22.99
PGSC0003DMT400061915	Potato	cytosol, plastid	18.58	20.0

Protein Annotations

MapMan:10.5.5	EntrezGene:102601133	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1BYM4	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400021685	PGSC:PGSC0003DMG400021685	EnsemblPlants:PGSC0003DMT400055831	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002966467	RefSeq:XP_006366027.1	SEG:seg	:

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400021685]

Coordinates

chr10:+:3919958..3924595

Molecular Weight (calculated)

19975.8 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.031

Length

183 amino acids

Sequence
(BLAST)

001: MSTILDSLAI SSIFYANLRP SLRPSPPFSA AWDRRAPLKF TGFSISYTSV NNQVSLASSS GISRRTNSVS GEASDVAFDV PTVTEETWDS LVLNATEPVV
101: VEFWAPWCGP CRMFHPVISD LAKQYTGRVK CFKLNTDDSP SVASRYGIRS IPTIMIFVNG EKKDAIIGAV PKTSLTASID KFL

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.