Factsheet for PGSC0003DMT400032333

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT3G15360.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063190.2.1	Tomato	plastid	97.25	97.25
VIT_00s0238g00110.t01	Wine grape	cytosol	29.67	76.06
PGSC0003DMT400064434	Potato	plastid	70.33	68.45
PGSC0003DMT400039743	Potato	plastid	65.93	67.04
VIT_19s0014g02890.t01	Wine grape	plastid	67.03	64.89
KRH22105	Soybean	plastid	62.64	62.64
KRH55312	Soybean	nucleus, plastid	57.69	62.13
KRH27229	Soybean	plastid	60.99	60.99
KRH26086	Soybean	plastid	57.14	59.43
HORVU2Hr1G091130.1	Barley	mitochondrion	43.41	55.63
Os02t0639900-01	Rice	plastid	50.55	53.18
GSMUA_Achr1P00150_001	Banana	plastid	54.4	52.66
Zm00001d051250_P001	Maize	plastid	48.35	50.87
EES07212	Sorghum	plastid	48.35	50.57
Zm00001d017379_P001	Maize	plastid	47.8	50.29
TraesCS2D01G368700.1	Wheat	plastid	50.0	50.0
PGSC0003DMT400055831	Potato	mitochondrion, plastid	50.0	49.73
Bra001592.1-P	Field mustard	extracellular, plasma membrane	44.51	49.69
Bra027250.1-P	Field mustard	plastid	52.2	49.48
CDX97662	Canola	plastid	51.65	48.96
GSMUA_Achr5P20730_001	Banana	plastid	51.1	48.95
GSMUA_Achr11P...	Banana	plastid	48.9	48.9
TraesCS2B01G389500.1	Wheat	plastid	49.45	48.65
CDX98554	Canola	plastid	51.1	48.44
AT3G15360.1	Thale cress	plastid	51.1	48.19
TraesCS2A01G372500.1	Wheat	plastid	48.35	47.83
Zm00001d002854_P001	Maize	plastid	46.15	46.15
Os04t0530600-01	Rice	plastid	45.6	46.11
EES12552	Sorghum	plastid	45.6	44.62
CDX75826	Canola	endoplasmic reticulum	30.22	43.31
HORVU2Hr1G091200.5	Barley	cytosol	43.96	43.24
CDX82437	Canola	endoplasmic reticulum	29.67	42.86
GSMUA_Achr4P29990_001	Banana	plastid	52.75	40.51
GSMUA_Achr5P12100_001	Banana	plastid	53.3	39.43
PGSC0003DMT400066596	Potato	plastid	35.16	35.56
PGSC0003DMT400042164	Potato	cytosol, plastid	25.82	25.54
PGSC0003DMT400061915	Potato	cytosol, plastid	23.08	24.71

Protein Annotations

MapMan:10.5.5	EntrezGene:102588026	Gene3D:3.40.30.10	ProteinID:AFX67008	ProteinID:AFX67008.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
EMBL:JX683445	UniProt:M1AX88	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400012420	PGSC:PGSC0003DMG400012420	EnsemblPlants:PGSC0003DMT400032333
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367	SUPFAM:SSF52833
TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002950EA5
RefSeq:XP_006348246.1	SEG:seg	:	:	:	:

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400012420]

Coordinates

chr7:+:53255348..53258068

Molecular Weight (calculated)

19518.8 Da

IEP (calculated)

9.046

GRAVY (calculated)

0.195

Length

182 amino acids

Sequence
(BLAST)

001: MAAVLETITV PRASALPSSS LAPVAGYSFS GPRSSVRFSQ FSGLKIQPIR SSVSTSSCSK IIPRGGRVVC EAQNTAVEVA AVSDKTWKTL VVESTVPVLV
101: EFWAPWCGPC RMIHPVIDEL AKEYVGKLTC LKLNTDESPS IATEFGIRSI PTVMIFKNGE KKDAIIGAVP KSTLTTSIEK FL

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.