Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 76.76 | 100.0 |
| TraesCS2D01G368700.1 | Wheat | plastid | 74.05 | 75.27 |
| TraesCS2A01G372500.1 | Wheat | plastid | 74.59 | 75.0 |
| TraesCS2B01G389500.1 | Wheat | plastid | 74.05 | 74.05 |
| Os04t0530600-01 | Rice | plastid | 65.95 | 67.78 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 24.86 | 64.79 |
| Zm00001d002854_P001 | Maize | plastid | 62.16 | 63.19 |
| EES12552 | Sorghum | plastid | 63.24 | 62.9 |
| GSMUA_Achr11P... | Banana | plastid | 52.97 | 53.85 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 51.89 | 50.53 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 49.19 | 48.4 |
| KRH55312 | Soybean | nucleus, plastid | 43.78 | 47.93 |
| KRH26086 | Soybean | plastid | 44.32 | 46.86 |
| KRH22105 | Soybean | plastid | 44.86 | 45.6 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 43.24 | 43.96 |
| Solyc07g063190.2.1 | Tomato | plastid | 43.24 | 43.96 |
| PGSC0003DMT400064434 | Potato | plastid | 44.32 | 43.85 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 44.32 | 43.62 |
| KRH27229 | Soybean | plastid | 42.7 | 43.41 |
| Solyc10g006970.2.1 | Tomato | plastid | 43.78 | 43.32 |
| PGSC0003DMT400039743 | Potato | plastid | 40.54 | 41.9 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 52.97 | 41.35 |
| Solyc12g013810.1.1 | Tomato | plastid | 40.0 | 41.34 |
| HORVU7Hr1G119730.1 | Barley | endoplasmic reticulum | 28.11 | 41.27 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 52.43 | 39.43 |
| HORVU5Hr1G033050.1 | Barley | plastid | 36.22 | 38.29 |
| HORVU5Hr1G033060.1 | Barley | plastid | 36.22 | 38.29 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 31.89 | 36.2 |
| CDX97662 | Canola | plastid | 36.22 | 34.9 |
| Bra027250.1-P | Field mustard | plastid | 36.22 | 34.9 |
| CDX98554 | Canola | plastid | 35.68 | 34.38 |
| AT3G15360.1 | Thale cress | plastid | 35.68 | 34.2 |
| CDX82437 | Canola | endoplasmic reticulum | 20.54 | 30.16 |
| CDX75826 | Canola | endoplasmic reticulum | 20.54 | 29.92 |
| HORVU7Hr1G010470.2 | Barley | cytosol | 10.81 | 27.03 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 11.89 | 26.83 |
| HORVU2Hr1G075240.6 | Barley | plastid | 26.49 | 26.63 |
| HORVU5Hr1G116290.1 | Barley | plastid | 14.59 | 19.42 |
| HORVU3Hr1G111930.2 | Barley | plastid | 21.08 | 18.84 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:HORVU2Hr1G091200 | EnsemblPlants:HORVU2Hr1G091200.5 | InterPro:IPR013766 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF356 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:647301230..647304039
Molecular Weight (calculated)
16514.9 Da
IEP (calculated)
8.632
GRAVY (calculated)
-0.213
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: EGKGREGVGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAQALRAV SGPAGSRRWG VRRGASVVRA VQGQDTTIQV PDVTKATWQS LVIESEIPVL
101: VEFWASWCGP CKMIDPVIGK LSKEYEGKLK CYKLNTDENP DIASQYGVRS IPTMMIFKNG EKKDAVIGAV PESTLITCIE KFTER
101: VEFWASWCGP CKMIDPVIGK LSKEYEGKLK CYKLNTDENP DIASQYGVRS IPTMMIFKNG EKKDAVIGAV PESTLITCIE KFTER
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Arabidopsis Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.