Factsheet for GSMUA_Achr1P00150_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT3G15360.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT3G15360.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0238g00110.t01	Wine grape	cytosol	26.06	69.01
GSMUA_Achr5P20730_001	Banana	plastid	69.68	68.95
HORVU2Hr1G091130.1	Barley	mitochondrion	48.4	64.08
KRH26086	Soybean	plastid	56.38	60.57
GSMUA_Achr11P...	Banana	plastid	58.51	60.44
KRH55312	Soybean	nucleus, plastid	54.26	60.35
Os02t0639900-01	Rice	plastid	55.32	60.12
Zm00001d002854_P001	Maize	plastid	57.98	59.89
Zm00001d017379_P001	Maize	plastid	54.79	59.54
Os04t0530600-01	Rice	plastid	56.91	59.44
EES07212	Sorghum	plastid	54.79	59.2
Zm00001d051250_P001	Maize	plastid	53.72	58.38
TraesCS2D01G368700.1	Wheat	plastid	54.79	56.59
TraesCS2A01G372500.1	Wheat	plastid	55.32	56.52
GSMUA_Achr5P12100_001	Banana	plastid	73.94	56.5
VIT_19s0014g02890.t01	Wine grape	plastid	56.38	56.38
TraesCS2B01G389500.1	Wheat	plastid	54.79	55.68
EES12552	Sorghum	plastid	54.79	55.38
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	52.66	54.4
KRH22105	Soybean	plastid	52.66	54.4
Solyc07g063190.2.1	Tomato	plastid	52.13	53.85
GSMUA_Achr4P29990_001	Banana	plastid	67.02	53.16
KRH27229	Soybean	plastid	51.06	52.75
PGSC0003DMT400039743	Potato	plastid	47.34	49.72
PGSC0003DMT400064434	Potato	plastid	48.94	49.2
HORVU2Hr1G091200.5	Barley	cytosol	48.4	49.19
Solyc10g006970.2.1	Tomato	plastid	48.4	48.66
Solyc12g013810.1.1	Tomato	plastid	46.28	48.6
AT3G15360.1	Thale cress	plastid	45.21	44.04
CDX97662	Canola	plastid	44.68	43.75
Bra027250.1-P	Field mustard	plastid	44.68	43.75
Bra001592.1-P	Field mustard	extracellular, plasma membrane	37.77	43.56
GSMUA_Achr3P02940_001	Banana	extracellular	26.6	43.48
CDX98554	Canola	plastid	44.15	43.23
GSMUA_Achr11P...	Banana	plastid	38.3	39.34
GSMUA_Achr11P...	Banana	cytosol	14.89	38.36
CDX75826	Canola	endoplasmic reticulum	25.0	37.01
CDX82437	Canola	endoplasmic reticulum	24.47	36.51
GSMUA_Achr2P03790_001	Banana	plastid	25.53	26.97
GSMUA_Achr6P25720_001	Banana	plastid	20.74	22.94
GSMUA_Achr1P13230_001	Banana	extracellular	15.96	22.22

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G00150_001	EnsemblPlants:GSMUA_Achr1P00150_001	EnsemblPlants:GSMUA_Achr1T00150_001	InterPro:IPR013766
UniProt:M0RVS3	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF356	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI000295CE42	SEG:seg	:	:	:

Description

Thioredoxin M2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G00150_001]

Coordinates

chr1:-:109666..119120

Molecular Weight (calculated)

19979.5 Da

IEP (calculated)

9.565

GRAVY (calculated)

0.144

Length

188 amino acids

Sequence
(BLAST)

001: MAATVLESFA VTRPPHGVAP ASAPRAAAVA YVPSPLGRCG LGLLPRFTGL RCASLSPSPR VKPAAAAPRS RGAVVCEAQK TAVQLPEVTK STWQSLVLDS
101: SVPVLIDFWA PWCGPCRMIE PTVVKLAKAY EGKLKCYKLN TDESPDIATQ YGIRSIPTMM IFKNGEKKDA VIGAVPESTL VASIEKFV

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.