Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 64.77 | 76.69 |
| CDX82437 | Canola | endoplasmic reticulum | 46.63 | 71.43 |
| CDX75826 | Canola | endoplasmic reticulum | 45.6 | 69.29 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 23.32 | 63.38 |
| KRH55312 | Soybean | nucleus, plastid | 48.19 | 55.03 |
| PGSC0003DMT400039743 | Potato | plastid | 49.22 | 53.07 |
| KRH26086 | Soybean | plastid | 47.67 | 52.57 |
| Solyc12g013810.1.1 | Tomato | plastid | 48.7 | 52.51 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 48.19 | 51.1 |
| Solyc07g063190.2.1 | Tomato | plastid | 47.67 | 50.55 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 48.19 | 49.47 |
| KRH27229 | Soybean | plastid | 46.11 | 48.9 |
| KRH22105 | Soybean | plastid | 46.11 | 48.9 |
| PGSC0003DMT400064434 | Potato | plastid | 46.63 | 48.13 |
| Solyc10g006970.2.1 | Tomato | plastid | 46.11 | 47.59 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 34.2 | 46.48 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 44.04 | 45.21 |
| AT1G03680.1 | Thale cress | plastid | 41.45 | 44.69 |
| Zm00001d017379_P001 | Maize | plastid | 38.86 | 43.35 |
| EES07212 | Sorghum | plastid | 38.86 | 43.1 |
| TraesCS2D01G368700.1 | Wheat | plastid | 40.41 | 42.86 |
| Zm00001d051250_P001 | Maize | plastid | 38.34 | 42.77 |
| Zm00001d002854_P001 | Maize | plastid | 39.9 | 42.31 |
| Os02t0639900-01 | Rice | plastid | 37.82 | 42.2 |
| TraesCS2A01G372500.1 | Wheat | plastid | 39.9 | 41.85 |
| Os04t0530600-01 | Rice | plastid | 38.86 | 41.67 |
| TraesCS2B01G389500.1 | Wheat | plastid | 39.9 | 41.62 |
| AT4G03520.1 | Thale cress | plastid | 39.9 | 41.4 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 40.41 | 41.05 |
| EES12552 | Sorghum | plastid | 38.34 | 39.78 |
| GSMUA_Achr11P... | Banana | plastid | 37.31 | 39.56 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 34.2 | 35.68 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 43.52 | 34.15 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 41.45 | 33.76 |
| AT2G15570.2 | Thale cress | plastid | 29.02 | 32.18 |
| AT4G12170.1 | Thale cress | extracellular | 22.28 | 28.1 |
| AT1G76760.1 | Thale cress | plastid | 24.87 | 27.91 |
| AT1G43560.1 | Thale cress | plastid | 22.8 | 26.35 |
| AT1G50320.1 | Thale cress | plastid | 23.83 | 25.27 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | EntrezGene:820775 | UniProt:A0A178VJ83 | ProteinID:AAF35402.1 | ProteinID:AEE75659.1 |
| EMBL:AF095752 | EMBL:AF375443 | EMBL:AK227059 | ArrayExpress:AT3G15360 | EnsemblPlantsGene:AT3G15360 | RefSeq:AT3G15360 |
| TAIR:AT3G15360 | RefSeq:AT3G15360-TAIR-G | EnsemblPlants:AT3G15360.1 | TAIR:AT3G15360.1 | Symbol:ATHM4 | EMBL:AY060538 |
| EMBL:AY088157 | ProteinID:BAB02365.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0004857 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006109 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008047 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009579 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0016020 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0019904 | GO:GO:0030234 | GO:GO:0030312 |
| GO:GO:0034599 | GO:GO:0043085 | GO:GO:0043086 | GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 |
| GO:GO:0098869 | InterPro:IPR013766 | RefSeq:NP_188155.1 | ProteinID:OAP05531.1 | PFAM:PF00085 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF300 | UniProt:Q9SEU6 |
| SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| UniParc:UPI0000136EB2 | SEG:seg | : | : | : | : |
Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
Coordinates
chr3:+:5188241..5189836
Molecular Weight (calculated)
21173.4 Da
IEP (calculated)
10.176
GRAVY (calculated)
-0.120
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.