Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013872.1-P | |
| Bra025315.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | Bra025315.1-P | AT3G27960.1 | 21798944 |
| AT3G15360.1 | Bra013872.1-P | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82437 | Canola | endoplasmic reticulum | 75.46 | 97.62 |
| CDX75826 | Canola | endoplasmic reticulum | 73.01 | 93.7 |
| Bra027250.1-P | Field mustard | plastid | 77.3 | 65.62 |
| AT3G15360.1 | Thale cress | plastid | 76.69 | 64.77 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 25.15 | 57.75 |
| Solyc12g013810.1.1 | Tomato | plastid | 50.92 | 46.37 |
| PGSC0003DMT400039743 | Potato | plastid | 50.92 | 46.37 |
| KRH55312 | Soybean | nucleus, plastid | 47.85 | 46.15 |
| KRH26086 | Soybean | plastid | 48.47 | 45.14 |
| KRH27229 | Soybean | plastid | 50.31 | 45.05 |
| Solyc07g063190.2.1 | Tomato | plastid | 49.69 | 44.51 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 49.69 | 44.51 |
| KRH22105 | Soybean | plastid | 49.69 | 44.51 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 50.92 | 44.15 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 36.2 | 41.55 |
| PGSC0003DMT400064434 | Potato | plastid | 46.63 | 40.64 |
| Solyc10g006970.2.1 | Tomato | plastid | 46.01 | 40.11 |
| Zm00001d051250_P001 | Maize | plastid | 42.33 | 39.88 |
| Zm00001d017379_P001 | Maize | plastid | 41.72 | 39.31 |
| EES07212 | Sorghum | plastid | 41.72 | 39.08 |
| Bra000821.1-P | Field mustard | plastid | 42.94 | 38.89 |
| Zm00001d002854_P001 | Maize | plastid | 42.94 | 38.46 |
| Os02t0639900-01 | Rice | plastid | 40.49 | 38.15 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 43.56 | 37.77 |
| Bra034214.1-P | Field mustard | plastid | 41.72 | 36.96 |
| TraesCS2D01G368700.1 | Wheat | plastid | 41.1 | 36.81 |
| Os04t0530600-01 | Rice | plastid | 40.49 | 36.67 |
| GSMUA_Achr11P... | Banana | plastid | 39.88 | 35.71 |
| TraesCS2B01G389500.1 | Wheat | plastid | 40.49 | 35.68 |
| EES12552 | Sorghum | plastid | 40.49 | 35.48 |
| TraesCS2A01G372500.1 | Wheat | plastid | 39.88 | 35.33 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 39.88 | 34.21 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 36.2 | 31.89 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 42.94 | 29.54 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 42.94 | 28.46 |
| Bra019005.1-P | Field mustard | extracellular | 23.31 | 27.54 |
| Bra015223.1-P | Field mustard | plastid | 28.83 | 27.49 |
| Bra015721.1-P | Field mustard | plastid | 26.99 | 25.58 |
| Bra018842.1-P | Field mustard | plastid | 25.15 | 22.53 |
| Bra032547.1-P | Field mustard | plastid | 38.65 | 18.81 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | EnsemblPlantsGene:Bra001592 | EnsemblPlants:Bra001592.1 | EnsemblPlants:Bra001592.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004857 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006109 | GO:GO:0006662 |
| GO:GO:0008047 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0015035 | GO:GO:0016020 | GO:GO:0019725 | GO:GO:0019904 | GO:GO:0030234 | GO:GO:0030312 |
| GO:GO:0043085 | GO:GO:0043086 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 | UniProt:M4CBL2 |
| PFAM:PF00085 | PRINTS:PR00421 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF367 | SUPFAM:SSF52833 |
| SignalP:SignalP-noTM | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0002540A3E |
| SEG:seg | : | : | : | : | : |
Description
AT3G15360 (E=9e-057) ATHM4, TRX-M4, ATM4 | TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4); enzyme activator
Coordinates
chrA03:+:17242073..17242878
Molecular Weight (calculated)
17968.5 Da
IEP (calculated)
4.812
GRAVY (calculated)
-0.042
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLHDCITE ILLLSLLITS SISSTSAVTV GSHVRFPECR GEIVCENQGT TSAAAVEVPN RSDSEWQTQV LESDVPVLVE FWAPSCGPCR MIRPIVDQLA
101: KDFAGKFKFY KINTDESPNT TNRYGIRSVP TVIIFKDGEK KDSITGAVPR EALEKTIEMF LVQ
101: KDFAGKFKFY KINTDESPNT TNRYGIRSVP TVIIFKDGEK KDSITGAVPR EALEKTIEMF LVQ
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Arabidopsis Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.