CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES05647
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	EES05647	AT3G27960.1	21798944
AT3G15360.1	EER89430	AT4G25200.1	21798944
AT3G15360.1	EER89431	AT4G25200.1	21798944
AT3G15360.1	KXG19616	AT4G25200.1	21798944
AT3G15360.1	OQU75612	AT4G25200.1	21798944
AT3G15360.1	OQU75930	AT4G25200.1	21798944
AT3G15360.1	OQU76071	AT4G25200.1	21798944
AT3G15360.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002854_P001	Maize	plastid	86.56	88.46
HORVU2Hr1G091130.1	Barley	mitochondrion	62.9	82.39
Os04t0530600-01	Rice	plastid	72.04	74.44
TraesCS2D01G368700.1	Wheat	plastid	70.43	71.98
TraesCS2B01G389500.1	Wheat	plastid	70.97	71.35
TraesCS2A01G372500.1	Wheat	plastid	68.82	69.57
EES07212	Sorghum	plastid	61.29	65.52
HORVU2Hr1G091200.5	Barley	cytosol	62.9	63.24
VIT_00s0238g00110.t01	Wine grape	cytosol	23.12	60.56
GSMUA_Achr11P...	Banana	plastid	53.76	54.95
GSMUA_Achr1P00150_001	Banana	plastid	55.38	54.79
GSMUA_Achr5P20730_001	Banana	plastid	55.91	54.74
KRH55312	Soybean	nucleus, plastid	45.16	49.7
KRH26086	Soybean	plastid	46.24	49.14
KRH22105	Soybean	plastid	46.77	47.8
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	44.62	45.6
KRH27229	Soybean	plastid	44.62	45.6
VIT_19s0014g02890.t01	Wine grape	plastid	45.7	45.21
PGSC0003DMT400064434	Potato	plastid	45.16	44.92
Solyc10g006970.2.1	Tomato	plastid	45.16	44.92
Solyc07g063190.2.1	Tomato	plastid	43.55	44.51
GSMUA_Achr5P12100_001	Banana	plastid	57.53	43.5
GSMUA_Achr4P29990_001	Banana	plastid	54.84	43.04
PGSC0003DMT400039743	Potato	plastid	41.4	43.02
EES16784	Sorghum	plastid	41.94	42.62
Solyc12g013810.1.1	Tomato	plastid	40.86	42.46
KXG20981	Sorghum	plastid	39.25	41.71
Bra001592.1-P	Field mustard	extracellular, plasma membrane	35.48	40.49
CDX97662	Canola	plastid	40.32	39.06
Bra027250.1-P	Field mustard	plastid	40.32	39.06
CDX98554	Canola	plastid	39.78	38.54
AT3G15360.1	Thale cress	plastid	39.78	38.34
CDX82437	Canola	endoplasmic reticulum	23.12	34.13
CDX75826	Canola	endoplasmic reticulum	23.12	33.86
EES12176	Sorghum	plastid	30.65	29.84
EES11645	Sorghum	plastid	24.73	26.29
EES02107	Sorghum	plastid	20.97	22.81

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EntrezGene:8056042	UniProt:C5YCL3	EnsemblPlants:EES12552	ProteinID:EES12552
ProteinID:EES12552.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF356	EnsemblPlantsGene:SORBI_3006G157600	SUPFAM:SSF52833
unigene:Sbi.7592	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0001A873FF	RefSeq:XP_002448224.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:51642270..51646342

Molecular Weight (calculated)

19900.0 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.036

Length

186 amino acids

Sequence
(BLAST)

001: MAAGLAFPVP AASSPLARVS SPAHTAHRIC CAIPSSSSPR TVKYPPLRAA TVLSGNRRGT GRGASVVCAV QGQDANATIQ VPDVTKSTWQ SLVIESELPV
101: LVEFWASWCG PCKMIDPVVG KLSKDYEGKL RCYKLNTDEN PDIASQYGVR SIPTLMILKN GEKKESVIGA VPESTLVTCI EKFVER

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.