Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr2P09630_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | GSMUA_Achr10P... | AT3G27960.1 | 21798944 |
| AT3G15360.1 | GSMUA_Achr2P09630_001 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | GSMUA_Achr10P... | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 53.85 | 69.01 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 25.82 | 66.2 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 64.29 | 61.58 |
| Os02t0639900-01 | Rice | plastid | 56.04 | 58.96 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 60.44 | 58.51 |
| Zm00001d017379_P001 | Maize | plastid | 54.95 | 57.8 |
| Os04t0530600-01 | Rice | plastid | 57.14 | 57.78 |
| EES07212 | Sorghum | plastid | 54.95 | 57.47 |
| Zm00001d051250_P001 | Maize | plastid | 54.4 | 57.23 |
| TraesCS2D01G368700.1 | Wheat | plastid | 56.59 | 56.59 |
| TraesCS2B01G389500.1 | Wheat | plastid | 56.04 | 55.14 |
| TraesCS2A01G372500.1 | Wheat | plastid | 55.49 | 54.89 |
| Zm00001d002854_P001 | Maize | plastid | 53.85 | 53.85 |
| EES12552 | Sorghum | plastid | 54.95 | 53.76 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 53.85 | 52.97 |
| KRH55312 | Soybean | nucleus, plastid | 48.35 | 52.07 |
| KRH26086 | Soybean | plastid | 50.0 | 52.0 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 69.23 | 51.22 |
| KRH22105 | Soybean | plastid | 51.1 | 51.1 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 52.2 | 50.53 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 63.74 | 48.95 |
| Solyc07g063190.2.1 | Tomato | plastid | 48.9 | 48.9 |
| KRH27229 | Soybean | plastid | 48.9 | 48.9 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 48.9 | 48.9 |
| PGSC0003DMT400064434 | Potato | plastid | 46.15 | 44.92 |
| Solyc10g006970.2.1 | Tomato | plastid | 45.6 | 44.38 |
| PGSC0003DMT400039743 | Potato | plastid | 41.21 | 41.9 |
| Solyc12g013810.1.1 | Tomato | plastid | 40.66 | 41.34 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 35.71 | 39.88 |
| GSMUA_Achr3P02940_001 | Banana | extracellular | 24.73 | 39.13 |
| CDX97662 | Canola | plastid | 39.56 | 37.5 |
| Bra027250.1-P | Field mustard | plastid | 39.56 | 37.5 |
| AT3G15360.1 | Thale cress | plastid | 39.56 | 37.31 |
| CDX98554 | Canola | plastid | 39.01 | 36.98 |
| GSMUA_Achr11P... | Banana | plastid | 36.26 | 36.07 |
| GSMUA_Achr11P... | Banana | cytosol | 13.74 | 34.25 |
| CDX75826 | Canola | endoplasmic reticulum | 22.53 | 32.28 |
| CDX82437 | Canola | endoplasmic reticulum | 21.98 | 31.75 |
| GSMUA_Achr2P03790_001 | Banana | plastid | 23.08 | 23.6 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 21.98 | 23.53 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 14.84 | 20.0 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr11G21170_001 | EnsemblPlants:GSMUA_Achr11P21170_001 | EnsemblPlants:GSMUA_Achr11T21170_001 | InterPro:IPR013766 |
| UniProt:M0RU47 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF300 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | UniParc:UPI000294AD1A | SEG:seg | : | : | : |
Description
Thioredoxin M1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G21170_001]
Coordinates
chr11:-:21907937..21910727
Molecular Weight (calculated)
19850.4 Da
IEP (calculated)
9.908
GRAVY (calculated)
0.067
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVPRLTASM ALPVPRTAAL APAPASSSLS RRATRLLPVF EGLRRCTRLP GVSFATSSRA VRRGAVVCEA PETTTGLPDV SKATWQSLVM DSDVPVLVDF
101: WAPWCGPCRM IEPTIIKLAK VYEGKLRCYK LNTDENPDIT TQYGIRSIPT MMIFKNGEKK DAVIGAVPES TLIISIEKFV AR
101: WAPWCGPCRM IEPTIIKLAK VYEGKLRCYK LNTDENPDIT TQYGIRSIPT MMIFKNGEKK DAVIGAVPES TLIISIEKFV AR
001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
Arabidopsis Description
ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.