Factsheet for GSMUA_Achr11P12620_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15310.t01	Wine grape	plastid	55.19	55.19
Zm00001d041804_P001	Maize	plastid	49.18	53.89
KRH18101	Soybean	plastid	27.87	53.68
Os12t0188700-02	Rice	plastid	50.27	53.49
Zm00001d023707_P002	Maize	plastid	50.27	52.87
HORVU5Hr1G033060.1	Barley	plastid	50.27	52.57
TraesCS5D01G118500.1	Wheat	plastid	50.27	52.57
TraesCS5B01G111800.1	Wheat	plastid	50.27	52.57
TraesCS5A01G110300.1	Wheat	plastid	50.27	52.57
HORVU5Hr1G033050.1	Barley	plastid	50.27	52.57
KRH64566	Soybean	plastid	51.91	52.49
KRH53365	Soybean	plastid	51.37	51.93
EES16784	Sorghum	plastid	50.27	50.27
GSMUA_Achr3P02940_001	Banana	extracellular	28.42	45.22
GSMUA_Achr11P...	Banana	cytosol	17.49	43.84
KRH15927	Soybean	plastid	28.96	41.73
GSMUA_Achr5P20730_001	Banana	plastid	41.53	40.0
GSMUA_Achr1P00150_001	Banana	plastid	39.34	38.3
GSMUA_Achr11P...	Banana	plastid	36.07	36.26
GSMUA_Achr4P29990_001	Banana	plastid	41.53	32.07
GSMUA_Achr5P12100_001	Banana	plastid	39.34	29.27
GSMUA_Achr2P03790_001	Banana	plastid	24.59	25.28
GSMUA_Achr1P13230_001	Banana	extracellular	16.94	22.96
GSMUA_Achr6P25720_001	Banana	plastid	20.22	21.76

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009507	GO:GO:0009536	GO:GO:0009657	GO:GO:0009987	GO:GO:0015035	GO:GO:0016043
GO:GO:0016671	GO:GO:0019725	GO:GO:0042744	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G12620_001
EnsemblPlants:GSMUA_Achr11P12620_001	EnsemblPlants:GSMUA_Achr11T12620_001	InterPro:IPR013766	UniProt:M0RRP2	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00029671E7	SEG:seg

Description

Thioredoxin M-type, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G12620_001]

Coordinates

chr11:+:11656133..11656977

Molecular Weight (calculated)

19662.7 Da

IEP (calculated)

9.154

GRAVY (calculated)

0.025

Length

183 amino acids

Sequence
(BLAST)

001: MALKACFQVS TIASSAAATT GTWALPAHRP VFIRDKFHLP AATGHRKSVS SPPSTSTGDD GRRSRVTCRA KKTVDEVLVV VDANWENLVA ASDKPVLVEF
101: WAPWCGPCRM IAPVIKELAR DYAGKIVCCQ VNTDDCSGIA SRFGIRSIPT VLVFKNGEKK ESVIGAVPKS TLVSVVDKYL EGS

Best Arabidopsis Sequence Match ( AT2G15570.2 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAA EVTQRSWEDS VLKSETPVLV EFYTSWCGPC
101: RMVHRIIDEI AGDYAGKLNC YLLNADNDLP VAEEYEIKAV PVVLLFKNGE KRESIMGTMP KEFYISAIER VLNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.