Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G110300.1 | Wheat | plastid | 99.43 | 99.43 |
| TraesCS5B01G111800.1 | Wheat | plastid | 98.86 | 98.86 |
| HORVU5Hr1G033050.1 | Barley | plastid | 94.86 | 94.86 |
| HORVU5Hr1G033060.1 | Barley | plastid | 94.86 | 94.86 |
| Os12t0188700-02 | Rice | plastid | 73.71 | 75.0 |
| Zm00001d041804_P001 | Maize | plastid | 69.71 | 73.05 |
| Zm00001d023707_P002 | Maize | plastid | 70.86 | 71.26 |
| EES16784 | Sorghum | plastid | 72.0 | 68.85 |
| KRH18101 | Soybean | plastid | 30.29 | 55.79 |
| VIT_18s0001g15310.t01 | Wine grape | plastid | 57.71 | 55.19 |
| KRH53365 | Soybean | plastid | 56.0 | 54.14 |
| KRH64566 | Soybean | plastid | 56.0 | 54.14 |
| GSMUA_Achr11P... | Banana | plastid | 52.57 | 50.27 |
| KRH15927 | Soybean | plastid | 30.86 | 42.52 |
| TraesCS2D01G368700.1 | Wheat | plastid | 41.14 | 39.56 |
| TraesCS7D01G547400.1 | Wheat | plastid | 36.57 | 37.21 |
| TraesCS3D01G516800.1 | Wheat | plastid | 22.86 | 24.24 |
| TraesCS2D01G559200.1 | Wheat | plastid | 23.43 | 23.7 |
| TraesCS2D01G301800.1 | Wheat | plastid | 30.86 | 22.13 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009657 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016043 |
| GO:GO:0016671 | GO:GO:0019725 | GO:GO:0042744 | GO:GO:0045454 | InterPro:IPR013766 | PFAM:PF00085 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF367 | SUPFAM:SSF52833 |
| TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS5D01G118500 |
| EnsemblPlants:TraesCS5D01G118500.1 | TIGR:cd02947 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:158804381..158804996
Molecular Weight (calculated)
19183.4 Da
IEP (calculated)
8.404
GRAVY (calculated)
0.011
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MALETCLRGW ALHAPQAGIR ERLSSGSYAP SRPRTAAPAV VSPSPYKYAL VAARRPSRFV CKCKNVVDEV IVADEKNWDN MVIACESPVL VEFWAPWCGP
101: CRMIAPVIDE LAKDYVGKIK CCKVNTDDCP NIASTYGIRS IPTVLMFKDG EKKESVIGAV PKTTLCTIID KYIGS
101: CRMIAPVIDE LAKDYVGKIK CCKVNTDDCP NIASTYGIRS IPTVLMFKDG EKKESVIGAV PKTTLCTIID KYIGS
001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP
Arabidopsis Description
ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.