Factsheet for TraesCS5B01G111800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430
plastid: 23683508

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 23683508 doi

ZH He, HW Li, Y Shen, ZS Li, H Mi

National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G110300.1	Wheat	plastid	99.43	99.43
TraesCS5D01G118500.1	Wheat	plastid	98.86	98.86
HORVU5Hr1G033050.1	Barley	plastid	94.29	94.29
HORVU5Hr1G033060.1	Barley	plastid	94.29	94.29
Os12t0188700-02	Rice	plastid	73.71	75.0
Zm00001d041804_P001	Maize	plastid	69.71	73.05
Zm00001d023707_P002	Maize	plastid	70.86	71.26
EES16784	Sorghum	plastid	72.0	68.85
KRH18101	Soybean	plastid	30.29	55.79
VIT_18s0001g15310.t01	Wine grape	plastid	57.71	55.19
KRH53365	Soybean	plastid	56.0	54.14
KRH64566	Soybean	plastid	56.0	54.14
GSMUA_Achr11P...	Banana	plastid	52.57	50.27
KRH15927	Soybean	plastid	30.86	42.52
TraesCS2B01G389500.1	Wheat	plastid	41.71	39.46
TraesCS3B01G577800.1	Wheat	plastid	24.0	25.61
TraesCS2B01G588600.1	Wheat	plastid	24.0	24.0

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009507	GO:GO:0009536	GO:GO:0009657	GO:GO:0009987	GO:GO:0015035	GO:GO:0016043
GO:GO:0016671	GO:GO:0019725	GO:GO:0042744	GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367	SUPFAM:SSF52833
TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS5B01G111800
EnsemblPlants:TraesCS5B01G111800.1	TIGR:cd02947	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:169679447..169680062

Molecular Weight (calculated)

19133.3 Da

IEP (calculated)

8.403

GRAVY (calculated)

0.025

Length

175 amino acids

Sequence
(BLAST)

001: MALETCLRGW ALYAPQAGIR ERLSSGSYAP SRPRTAAPAV VSPSPYKSAL VAARRPSRFV CKCKNVVDEV IVADEKNWDN MVIACESPVL VEFWAPWCGP
101: CRMIAPVIDE LAKDYVGKIK CCKVNTDDCP NIASTYGIRS IPTVLMFKDG EKKESVIGAV PKTTLCTIID KYIGS

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.