Factsheet for VIT_18s0001g15310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53365	Soybean	plastid	66.12	66.85
KRH64566	Soybean	plastid	65.03	65.75
KRH18101	Soybean	plastid	33.88	65.26
VIT_00s0238g00110.t01	Wine grape	cytosol	25.14	64.79
Zm00001d041804_P001	Maize	plastid	54.1	59.28
Os12t0188700-02	Rice	plastid	54.64	58.14
TraesCS5B01G111800.1	Wheat	plastid	55.19	57.71
TraesCS5D01G118500.1	Wheat	plastid	55.19	57.71
TraesCS5A01G110300.1	Wheat	plastid	55.19	57.71
Zm00001d023707_P002	Maize	plastid	54.64	57.47
HORVU5Hr1G033060.1	Barley	plastid	54.64	57.14
HORVU5Hr1G033050.1	Barley	plastid	54.64	57.14
KRH15927	Soybean	plastid	39.34	56.69
GSMUA_Achr11P...	Banana	plastid	55.19	55.19
EES16784	Sorghum	plastid	54.64	54.64
VIT_12s0028g03850.t01	Wine grape	cytosol	39.34	52.55
VIT_19s0014g02890.t01	Wine grape	plastid	48.09	46.81
VIT_03s0063g00280.t01	Wine grape	plastid	36.07	38.37
VIT_18s0072g00400.t01	Wine grape	plastid	25.14	26.29
VIT_10s0042g00200.t01	Wine grape	plastid	23.5	24.43
VIT_10s0042g00430.t01	Wine grape	cytosol	8.74	18.82

Protein Annotations

MapMan:10.5.5	EntrezGene:100264263	wikigene:100264263	Gene3D:3.40.30.10	EMBL:AM476406	ProteinID:CAN72874
ProteinID:CAN72874.1	ProteinID:CBI19952	ProteinID:CBI19952.3	UniProt:E0CQM3	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507
GO:GO:0009536	GO:GO:0009657	GO:GO:0009987	GO:GO:0015035	GO:GO:0016043	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0042744	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100264263	wikigene:LOC100264263	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367	SUPFAM:SSF52833	TIGR:TC52892
TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00015C803E
ArrayExpress:VIT_18s0001g15310	EnsemblPlantsGene:VIT_18s0001g15310	EnsemblPlants:VIT_18s0001g15310.t01	unigene:Vvi.7253	RefSeq:XP_002266022	RefSeq:XP_002266022.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:13444700..13445878

Molecular Weight (calculated)

20136.3 Da

IEP (calculated)

8.085

GRAVY (calculated)

0.017

Length

183 amino acids

Sequence
(BLAST)

001: MALENCFQVS TVSCARAGVL QSHHPFSAKE KLNLPTCKGV KPSILSFSSS PSSLDYSFHR ICRKSRIVCK AREAVDEVQV VTDSSWSNVV IASENPVLVE
101: FWAPWCGPCR MIAPVIDELA KEYAGKIVCC KVNTDDCPNI ATQYGIRSIP TVLFFKNGER KESVIGAVPK STLTATIEKY VDM

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.