Factsheet for VIT_10s0042g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g02490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	VIT_08s0007g02490.t01	AT3G11630.1	25448674
AT1G50320.1	VIT_08s0007g02490.t01	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00200.t01	Wine grape	plastid	84.71	40.91
KRG90625	Soybean	plastid	81.18	38.12
KRH36129	Soybean	plastid	78.82	38.07
CDY42508	Canola	plastid	68.24	32.22
Bra018842.1-P	Field mustard	plastid	68.24	31.87
CDY22789	Canola	plastid	68.24	31.87
AT1G50320.1	Thale cress	plastid	67.06	31.32
GSMUA_Achr2P03790_001	Banana	plastid	64.71	30.9
Solyc01g008250.2.1	Tomato	plastid	63.53	29.67
TraesCS2D01G559200.1	Wheat	plastid	60.0	29.48
TraesCS2A01G555300.1	Wheat	plastid	58.82	29.07
Zm00001d001843_P001	Maize	plastid	60.0	28.81
PGSC0003DMT400042164	Potato	cytosol, plastid	62.35	28.8
TraesCS2B01G588600.1	Wheat	plastid	58.82	28.57
EES11645	Sorghum	plastid	58.82	28.57
Os04t0676100-01	Rice	extracellular, plastid	60.0	28.33
Zm00001d026608_P001	Maize	plastid	55.29	26.86
VIT_00s0238g00110.t01	Wine grape	cytosol	18.82	22.54
VIT_18s0072g00400.t01	Wine grape	plastid	28.24	13.71
VIT_12s0028g03850.t01	Wine grape	cytosol	20.0	12.41
VIT_03s0063g00280.t01	Wine grape	plastid	20.0	9.88
VIT_19s0014g02890.t01	Wine grape	plastid	21.18	9.57
VIT_18s0001g15310.t01	Wine grape	plastid	18.82	8.74

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	ProteinID:CCB52095	ProteinID:CCB52095.1	UniProt:F6HIP9	EMBL:FN595766
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	PFAM:PF00085	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270
SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00021084C6	ArrayExpress:VIT_10s0042g00430
EnsemblPlantsGene:VIT_10s0042g00430	EnsemblPlants:VIT_10s0042g00430.t01	:	:	:	:

Description

No Description!

Coordinates

chr10:+:13315860..13321158

Molecular Weight (calculated)

9551.5 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.216

Length

85 amino acids

Sequence
(BLAST)

1: MTVHSPSSIR SSIFVKMEYG DRLTVVKIDH DANPQLIEEY KVYGLPTLIL FKNGQEVPES RREGAITKGK LKEYVDALLE SISVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.