Factsheet for Solyc01g008250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc10g082030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	Solyc01g007740.2.1	AT3G11630.1	25448674
AT1G50320.1	Solyc10g082030.1.1	AT3G11630.1	25448674
AT1G50320.1	Solyc01g007740.2.1	AT5G06290.1	25448674
AT1G50320.1	Solyc10g082030.1.1	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042164	Potato	cytosol, plastid	96.15	95.11
VIT_10s0042g00430.t01	Wine grape	cytosol	29.67	63.53
VIT_10s0042g00200.t01	Wine grape	plastid	54.95	56.82
KRG90625	Soybean	plastid	52.75	53.04
KRH36129	Soybean	plastid	51.1	52.84
AT1G50320.1	Thale cress	plastid	52.2	52.2
CDY42508	Canola	plastid	50.55	51.11
Bra018842.1-P	Field mustard	plastid	50.55	50.55
CDY22789	Canola	plastid	50.55	50.55
Os04t0676100-01	Rice	extracellular, plastid	46.7	47.22
GSMUA_Achr2P03790_001	Banana	plastid	45.6	46.63
Zm00001d001843_P001	Maize	plastid	44.51	45.76
TraesCS2B01G588600.1	Wheat	plastid	42.86	44.57
TraesCS2D01G559200.1	Wheat	plastid	42.31	44.51
TraesCS2A01G555300.1	Wheat	plastid	41.76	44.19
Zm00001d026608_P001	Maize	plastid	42.31	44.0
EES11645	Sorghum	plastid	42.31	44.0
Solyc04g071560.2.1	Tomato	plastid	26.37	27.59
Solyc07g063190.2.1	Tomato	plastid	25.27	25.27
Solyc10g006970.2.1	Tomato	plastid	25.82	25.13
Solyc01g108020.2.1	Tomato	plastid	24.73	25.0
Solyc12g013810.1.1	Tomato	plastid	24.18	24.58
Solyc10g008390.2.1	Tomato	plastid	23.63	23.5

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008047
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0030234	GO:GO:0034599	GO:GO:0043085
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4AT23
PFAM:PF00085	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc01g008250.2	EnsemblPlants:Solyc01g008250.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0002762F1B	:	:	:	:	:

Description

Thioredoxin X, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G50320) UniProtKB/Swiss-Prot;Acc:Q8LD49]

Coordinates

chr1:-:2375077..2377870

Molecular Weight (calculated)

20185.5 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.137

Length

182 amino acids

Sequence
(BLAST)

001: MATMASVATS TSRISYPMTH SFNTTCNFAS PFRSSFSSLA WKKVRFSIGN RGRKLGFRNC STLRISCGGG LTEIKEDEFS DVVLKSDRPV LVEFVATWCG
101: PCRLIGPAME SVAEEYKEKI TVVKIDHDAS PKLIEEYKVY GLPTLILFKD GKEVPDSKRE GAITKVKLKE YLDGLLKTVS IA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.