Factsheet for PGSC0003DMT400042164

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042222
PGSC0003DMT400072569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	PGSC0003DMT400042222	AT3G11630.1	25448674
AT1G50320.1	PGSC0003DMT400072569	AT3G11630.1	25448674
AT1G50320.1	PGSC0003DMT400042222	AT5G06290.1	25448674
AT1G50320.1	PGSC0003DMT400072569	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008250.2.1	Tomato	plastid	95.11	96.15
VIT_10s0042g00430.t01	Wine grape	cytosol	28.8	62.35
VIT_10s0042g00200.t01	Wine grape	plastid	53.8	56.25
KRG90625	Soybean	plastid	51.09	51.93
KRH36129	Soybean	plastid	49.46	51.7
AT1G50320.1	Thale cress	plastid	50.54	51.1
CDY42508	Canola	plastid	48.91	50.0
Bra018842.1-P	Field mustard	plastid	48.91	49.45
CDY22789	Canola	plastid	48.91	49.45
Os04t0676100-01	Rice	extracellular, plastid	45.11	46.11
GSMUA_Achr2P03790_001	Banana	plastid	44.57	46.07
TraesCS2B01G588600.1	Wheat	plastid	42.39	44.57
TraesCS2D01G559200.1	Wheat	plastid	41.85	44.51
TraesCS2A01G555300.1	Wheat	plastid	41.3	44.19
Zm00001d001843_P001	Maize	plastid	42.39	44.07
Zm00001d026608_P001	Maize	plastid	41.3	43.43
EES11645	Sorghum	plastid	41.3	43.43
PGSC0003DMT400061915	Potato	cytosol, plastid	25.54	27.65
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	25.54	25.82
PGSC0003DMT400039743	Potato	plastid	24.46	25.14
PGSC0003DMT400064434	Potato	plastid	25.54	25.13
PGSC0003DMT400066596	Potato	plastid	23.91	24.44
PGSC0003DMT400055831	Potato	mitochondrion, plastid	23.37	23.5

Protein Annotations

MapMan:10.5.6	EntrezGene:102605867	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008047	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0030234	GO:GO:0043085	GO:GO:0045454	GO:GO:0055114
InterPro:IPR013766	UniProt:M1BCL3	PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400016361	PGSC:PGSC0003DMG400016361	EnsemblPlants:PGSC0003DMT400042164
PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000296307B	RefSeq:XP_006348549.1	SEG:seg

Description

Thioredoxin x [Source:PGSC_GENE;Acc:PGSC0003DMG400016361]

Coordinates

chr1:-:3938178..3941009

Molecular Weight (calculated)

20420.7 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.168

Length

184 amino acids

Sequence
(BLAST)

001: MATMATMASV ATSTSRISYP MTHSFNTTCN FASPFRSSFS SLGWKKVRFS IGNRKGKLGF RNCSTLRISC GGLTEIKEDE FSDVVLKSDR PVLVEFVATW
101: CGPCRLISPA MESVAEEYKE KITVVKIDHD ASPKIIEEYK VYGLPTLILF KDGKEVPDSK REGAITKVKL KEYLDGLLKT VSNA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.