Factsheet for Os04t0676100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 23159799

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0537700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	Os02t0537700-01	AT3G11630.1	25448674
AT1G50320.1	Os02t0537700-01	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001843_P001	Maize	plastid	73.89	75.14
TraesCS2A01G555300.1	Wheat	plastid	71.11	74.42
EES11645	Sorghum	plastid	72.22	74.29
Zm00001d026608_P001	Maize	plastid	71.11	73.14
TraesCS2B01G588600.1	Wheat	plastid	71.11	73.14
TraesCS2D01G559200.1	Wheat	plastid	70.0	72.83
VIT_10s0042g00430.t01	Wine grape	cytosol	28.33	60.0
GSMUA_Achr2P03790_001	Banana	plastid	57.22	57.87
CDY42508	Canola	plastid	48.89	48.89
VIT_10s0042g00200.t01	Wine grape	plastid	47.78	48.86
Bra018842.1-P	Field mustard	plastid	48.33	47.8
CDY22789	Canola	plastid	48.33	47.8
AT1G50320.1	Thale cress	plastid	47.78	47.25
Solyc01g008250.2.1	Tomato	plastid	47.22	46.7
KRG90625	Soybean	plastid	46.11	45.86
KRH36129	Soybean	plastid	44.44	45.45
PGSC0003DMT400042164	Potato	cytosol, plastid	46.11	45.11
Os01t0963400-01	Rice	cytosol	22.22	32.79
Os04t0430800-01	Rice	plastid	27.22	28.0
Os04t0530600-01	Rice	plastid	26.67	26.67
Os12t0188700-02	Rice	plastid	25.0	26.16
Os02t0639900-01	Rice	plastid	25.0	26.01

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	EntrezGene:4337394	EMBL:AK288094	EMBL:AM183298	ProteinID:BAF16167.1
ProteinID:BAS91621.1	ProteinID:CAE05750.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008047
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0030234	GO:GO:0034599	GO:GO:0043085
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlantsGene:Os04g0676100
EnsemblPlants:Os04t0676100-01	PFAM:PF00085	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270
UniProt:Q7XKD0	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00001B1732
RefSeq:XP_015636655.1	SEG:seg	:	:	:	:

Description

Thioredoxin xSimilar to Thioredoxin X, chloroplast precursor. (Os04t0676100-01)

Coordinates

chr4:+:34513602..34515261

Molecular Weight (calculated)

19122.1 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.045

Length

180 amino acids

Sequence
(BLAST)

001: MASAPSTTAS GLAPPPFSSA RGARLLPGAL LRLPPPPASV GSFRVVGPAA APPGGRRIAS ARVRCGAAVR FIGQSEFEAE VLQSDLPVLV DFVADWCGPC
101: RLIAPVVDWA AEEYEGRLKI VKIDHDANPQ LIEEYKVYGL PSLILFKDGK EVPGSRREGA ITKAKFKEYL EPLLSTSTVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.