Factsheet for Zm00001d026608_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016736_P001
Zm00001d050666_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	Zm00001d016736_P001	AT3G11630.1	25448674
AT1G50320.1	Zm00001d050666_P001	AT3G11630.1	25448674
AT1G50320.1	Zm00001d016736_P001	AT5G06290.1	25448674
AT1G50320.1	Zm00001d050666_P001	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11645	Sorghum	plastid	89.14	89.14
Zm00001d001843_P001	Maize	plastid	85.14	84.18
Os04t0676100-01	Rice	extracellular, plastid	73.14	71.11
TraesCS2A01G555300.1	Wheat	plastid	65.71	66.86
TraesCS2D01G559200.1	Wheat	plastid	65.14	65.9
TraesCS2B01G588600.1	Wheat	plastid	64.57	64.57
GSMUA_Achr2P03790_001	Banana	plastid	59.43	58.43
VIT_10s0042g00430.t01	Wine grape	cytosol	26.86	55.29
KRH36129	Soybean	plastid	45.71	45.45
KRG90625	Soybean	plastid	46.86	45.3
CDY42508	Canola	plastid	45.71	44.44
Bra018842.1-P	Field mustard	plastid	45.14	43.41
VIT_10s0042g00200.t01	Wine grape	plastid	43.43	43.18
CDY22789	Canola	plastid	44.57	42.86
Solyc01g008250.2.1	Tomato	plastid	44.0	42.31
AT1G50320.1	Thale cress	plastid	44.0	42.31
PGSC0003DMT400042164	Potato	cytosol, plastid	43.43	41.3
Zm00001d017379_P001	Maize	plastid	26.86	27.17
Zm00001d042017_P002	Maize	plastid	25.14	26.35
Zm00001d051250_P001	Maize	plastid	25.71	26.01
Zm00001d002854_P001	Maize	plastid	25.71	24.73
Zm00001d003667_P002	Maize	plastid	26.29	24.47
Zm00001d041804_P001	Maize	plastid	22.29	23.35
Zm00001d023707_P002	Maize	plastid	22.29	22.41

Protein Annotations

MapMan:10.5.6	EntrezGene:100280852	Gene3D:3.40.30.10	ProteinID:AQK47221.1	UniProt:B6SNA1	EMBL:EU954216
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114
InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270
SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000182B2EA
EnsemblPlantsGene:Zm00001d026608	EnsemblPlants:Zm00001d026608_P001	EnsemblPlants:Zm00001d026608_T001	SEG:seg	:	:

Description

Putative thioredoxin superfamily protein%3B Thioredoxin X

Coordinates

chr10:+:148913230..148914804

Molecular Weight (calculated)

19040.9 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.225

Length

175 amino acids

Sequence
(BLAST)

001: MASAPSTTAP TLAPSLRTPF SSAPRGARLA AAPRLSRAQP GQAGCRAAPG RLARPRSRVR CGAAARFIGQ GEFPAEVLES ELPVLVDFVA DWCGPCRLIA
101: PVVDWASEEY DGRVKIVKID HDANPQLIEE YKVYGLPTLI FFKNGREVAD SRREGAMTKD KFKQYLEPLL TTTVT

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.