Factsheet for VIT_10s0042g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g02490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	VIT_08s0007g02490.t01	AT3G11630.1	25448674
AT1G50320.1	VIT_08s0007g02490.t01	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00430.t01	Wine grape	cytosol	40.91	84.71
KRG90625	Soybean	plastid	65.91	64.09
KRH36129	Soybean	plastid	63.07	63.07
Solyc01g008250.2.1	Tomato	plastid	56.82	54.95
AT1G50320.1	Thale cress	plastid	55.68	53.85
PGSC0003DMT400042164	Potato	cytosol, plastid	56.25	53.8
CDY42508	Canola	plastid	54.55	53.33
Bra018842.1-P	Field mustard	plastid	54.55	52.75
CDY22789	Canola	plastid	54.55	52.75
GSMUA_Achr2P03790_001	Banana	plastid	51.7	51.12
Os04t0676100-01	Rice	extracellular, plastid	48.86	47.78
TraesCS2A01G555300.1	Wheat	plastid	45.45	46.51
EES11645	Sorghum	plastid	46.02	46.29
Zm00001d001843_P001	Maize	plastid	46.02	45.76
TraesCS2D01G559200.1	Wheat	plastid	44.32	45.09
TraesCS2B01G588600.1	Wheat	plastid	43.75	44.0
Zm00001d026608_P001	Maize	plastid	43.18	43.43
VIT_12s0028g03850.t01	Wine grape	cytosol	22.73	29.2
VIT_19s0014g02890.t01	Wine grape	plastid	29.55	27.66
VIT_00s0238g00110.t01	Wine grape	cytosol	10.8	26.76
VIT_18s0072g00400.t01	Wine grape	plastid	23.86	24.0
VIT_18s0001g15310.t01	Wine grape	plastid	24.43	23.5
VIT_03s0063g00280.t01	Wine grape	plastid	21.02	21.51

Protein Annotations

MapMan:10.5.6	EntrezGene:100242924	wikigene:100242924	EntrezGene:100258388	wikigene:100258388	Gene3D:3.40.30.10
ProteinID:CCB52083	ProteinID:CCB52083.1	UniProt:F6HIN7	EMBL:FN595766	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	EntrezGene:LOC100242924	wikigene:LOC100242924	EntrezGene:LOC100258388	wikigene:LOC100258388	PFAM:PF00085
PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	TIGR:TC52395
TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015CD2FD	ArrayExpress:VIT_10s0042g00200
EnsemblPlantsGene:VIT_10s0042g00200	EnsemblPlants:VIT_10s0042g00200.t01	unigene:Vvi.4812	RefSeq:XP_002268262	RefSeq:XP_002268262.1	RefSeq:XP_003633059
RefSeq:XP_003633059.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:13041837..13049161

Molecular Weight (calculated)

19450.6 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.037

Length

176 amino acids

Sequence
(BLAST)

001: METMVSNSMP ISVSSLPPVR VVASPRKLEF SSFTPKTTLF GSRSQRKIGF RCSPVRRAAV TCGVVTEIKE SQFSDVVLKA DEPVLVEFVA TWCGPCRLIS
101: PAMEAIAQEY GDRLTVVKID HDANPRLIEE YKVYGLPTLI LFKNGQEVPE SRREGAITKG KLKEYVDALL ESISVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.