Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0066g01280.t01 | |
| VIT_16s0022g00510.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | VIT_14s0066g01280.t01 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 34.04 | 90.14 |
| KRH55312 | Soybean | nucleus, plastid | 62.77 | 69.82 |
| KRH26086 | Soybean | plastid | 63.3 | 68.0 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 64.89 | 67.03 |
| KRH22105 | Soybean | plastid | 63.3 | 65.38 |
| Solyc07g063190.2.1 | Tomato | plastid | 63.3 | 65.38 |
| KRH27229 | Soybean | plastid | 61.7 | 63.74 |
| VIT_12s0028g03850.t01 | Wine grape | cytosol | 43.62 | 59.85 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 43.62 | 57.75 |
| PGSC0003DMT400039743 | Potato | plastid | 53.72 | 56.42 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 56.38 | 56.38 |
| Solyc12g013810.1.1 | Tomato | plastid | 53.19 | 55.87 |
| PGSC0003DMT400064434 | Potato | plastid | 54.79 | 55.08 |
| Solyc10g006970.2.1 | Tomato | plastid | 54.26 | 54.55 |
| GSMUA_Achr11P... | Banana | plastid | 50.53 | 52.2 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 44.15 | 50.92 |
| Os02t0639900-01 | Rice | plastid | 46.28 | 50.29 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 50.53 | 50.0 |
| Bra027250.1-P | Field mustard | plastid | 50.0 | 48.96 |
| CDX97662 | Canola | plastid | 50.0 | 48.96 |
| TraesCS2D01G368700.1 | Wheat | plastid | 47.34 | 48.9 |
| CDX98554 | Canola | plastid | 49.47 | 48.44 |
| AT3G15360.1 | Thale cress | plastid | 49.47 | 48.19 |
| TraesCS2B01G389500.1 | Wheat | plastid | 47.34 | 48.11 |
| VIT_18s0001g15310.t01 | Wine grape | plastid | 46.81 | 48.09 |
| Zm00001d017379_P001 | Maize | plastid | 44.15 | 47.98 |
| Zm00001d051250_P001 | Maize | plastid | 43.62 | 47.4 |
| TraesCS2A01G372500.1 | Wheat | plastid | 46.28 | 47.28 |
| Os04t0530600-01 | Rice | plastid | 45.21 | 47.22 |
| EES07212 | Sorghum | plastid | 43.62 | 47.13 |
| Zm00001d002854_P001 | Maize | plastid | 45.21 | 46.7 |
| CDX82437 | Canola | endoplasmic reticulum | 30.85 | 46.03 |
| EES12552 | Sorghum | plastid | 45.21 | 45.7 |
| CDX75826 | Canola | endoplasmic reticulum | 30.85 | 45.67 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 43.62 | 44.32 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 57.45 | 43.9 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 52.13 | 41.35 |
| VIT_03s0063g00280.t01 | Wine grape | plastid | 29.79 | 32.56 |
| VIT_10s0042g00200.t01 | Wine grape | plastid | 27.66 | 29.55 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 25.53 | 27.43 |
| VIT_10s0042g00430.t01 | Wine grape | cytosol | 9.57 | 21.18 |
Protein Annotations
| MapMan:10.5.5 | EntrezGene:100245250 | wikigene:100245250 | Gene3D:3.40.30.10 | ProteinID:CBI20319 | ProteinID:CBI20319.3 |
| UniProt:E0CSM0 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 |
| GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | EntrezGene:LOC100245250 |
| wikigene:LOC100245250 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF300 | SUPFAM:SSF52833 | TIGR:TC69504 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0001BE1CBE | ArrayExpress:VIT_19s0014g02890 | EnsemblPlantsGene:VIT_19s0014g02890 | EnsemblPlants:VIT_19s0014g02890.t01 |
| RefSeq:XP_002282265 | RefSeq:XP_002282265.2 | RefSeq:XP_003634680 | RefSeq:XP_003634680.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:2987871..3003816
Molecular Weight (calculated)
20059.4 Da
IEP (calculated)
9.636
GRAVY (calculated)
0.181
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVLDSLAV PRSSALPSSA FAPIASSPVC FLSGRRGLAR LPEFSGLKIQ PSLASRSVAA AGRSSRVGRR VGGVVCEAQE TAVEVPAVID ATWQSLVLDA
101: DTPVLVEFWA PWCGPCRMIH PVINELAKQY TGKLKCYKVN TDESPSIATR YGIRSIPTVI IFKSGEKKEA IIGAVPKSTL TTSIEKFL
101: DTPVLVEFWA PWCGPCRMIH PVINELAKQY TGKLKCYKVN TDESPSIATR YGIRSIPTVI IFKSGEKKEA IIGAVPKSTL TTSIEKFL
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Arabidopsis Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.