Factsheet for VIT_16s0022g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0904g00010.t01
VIT_01s0011g00580.t01
VIT_01s0244g00070.t01
VIT_02s0025g03580.t01
VIT_03s0017g01060.t01
VIT_03s0038g03560.t01
VIT_04s0008g02440.t01
VIT_04s0008g05610.t01
VIT_06s0004g06970.t01
VIT_07s0005g04980.t01
VIT_07s0205g00030.t01
VIT_08s0007g08590.t01
VIT_08s0007g08730.t01
VIT_08s0032g01120.t01
VIT_09s0002g06790.t01
VIT_10s0003g05560.t01
VIT_12s0028g02320.t01
VIT_12s0028g02610.t01
VIT_13s0019g01590.t01
VIT_13s0019g04580.t01
VIT_13s0067g02440.t01
VIT_13s0067g02560.t01
VIT_13s0067g03220.t01
VIT_14s0030g02260.t01
VIT_14s0030g02280.t01
VIT_14s0081g00110.t01
VIT_14s0081g00120.t01
VIT_14s0081g00270.t01
VIT_14s0081g00280.t01
VIT_16s0022g00510.t01
VIT_17s0000g07490.t01
VIT_18s0001g04140.t01
VIT_18s0001g14600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25200.1	VIT_12s0028g02610.t01	AT1G06270.1	21798944
AT4G25200.1	VIT_12s0028g02320.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0030g02260.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0030g02280.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0081g00110.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0081g00120.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0081g00270.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_14s0081g00280.t01	AT1G12620.1	21798944
AT4G25200.1	VIT_17s0000g07490.t01	AT1G19010.1	21798944
AT4G25200.1	VIT_01s0011g00580.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_07s0005g04980.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_08s0032g01120.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_10s0003g05560.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_13s0019g01590.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_18s0001g14600.t01	AT1G26460.1	21798944
AT4G25200.1	VIT_09s0002g06790.t01	AT1G52560.1	21798944
AT4G25200.1	VIT_02s0025g03580.t01	AT1G63470.1	21798944
AT4G25200.1	VIT_08s0007g08730.t01	AT2G41700.1	21798944
AT4G25200.1	VIT_08s0007g08590.t01	AT2G41720.1	21798944
AT4G25200.1	VIT_03s0038g03560.t01	AT2G47450.1	21798944
AT4G25200.1	VIT_13s0067g02440.t01	AT3G10970.1	21798944
AT4G25200.1	VIT_13s0019g04580.t01	AT3G54826.1	21798944
AT4G25200.1	VIT_13s0067g02560.t01	AT3G56290.1	21798944
AT4G25200.1	VIT_00s0904g00010.t01	AT4G05180.1	21798944
AT4G25200.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT4G25200.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944
AT4G25200.1	VIT_07s0205g00030.t01	AT4G37890.1	21798944
AT4G25200.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT4G25200.1	VIT_18s0001g04140.t01	AT5G09320.1	21798944
AT4G25200.1	VIT_04s0008g02440.t01	AT5G10710.1	21798944
AT4G25200.1	VIT_01s0244g00070.t01	AT5G13260.1	21798944
AT4G25200.1	VIT_16s0022g00510.t01	AT5G51440.1	21798944
AT4G25200.1	VIT_06s0004g06970.t01	AT5G58575.1	21798944
AT4G25200.1	VIT_03s0017g01060.t01	AT5G64350.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23958	Soybean	mitochondrion	63.94	62.74
AT4G25200.1	Thale cress	mitochondrion	59.62	59.05
Bra013872.1-P	Field mustard	mitochondrion	59.62	58.22
VIT_02s0154g00480.t01	Wine grape	mitochondrion, plastid	56.25	58.21
CDY38862	Canola	mitochondrion	54.81	58.16
Bra029174.1-P	Field mustard	mitochondrion	54.81	57.87
CDX89437	Canola	mitochondrion	59.13	57.75
CDY03368	Canola	mitochondrion	59.13	57.75
VIT_02s0154g00490.t01	Wine grape	mitochondrion	53.37	55.22
KRH39841	Soybean	mitochondrion	38.94	55.1
CDY32630	Canola	mitochondrion	42.79	52.35
AT5G51440.1	Thale cress	mitochondrion	51.92	51.43
CDY00476	Canola	mitochondrion	37.5	48.45
GSMUA_Achr10P...	Banana	mitochondrion	49.52	47.69
CDX99920	Canola	mitochondrion	35.58	46.25
TraesCS7D01G178900.1	Wheat	cytosol	26.44	45.08
Bra028253.1-P	Field mustard	mitochondrion	34.62	44.72
TraesCS7B01G083300.1	Wheat	cytosol	26.44	41.35
Os02t0758000-01	Rice	plastid	43.27	40.91
OQU85385	Sorghum	mitochondrion	42.79	40.27
TraesCS6A01G316200.1	Wheat	mitochondrion	39.42	38.14
Zm00001d052194_P001	Maize	mitochondrion	39.42	37.61
TraesCS7A01G232500.1	Wheat	plastid	37.02	37.38
TraesCS6B01G346700.1	Wheat	mitochondrion	38.46	37.21
TraesCS7D01G179400.1	Wheat	plastid	37.5	37.14
TraesCS6D01G295500.1	Wheat	mitochondrion	38.46	37.04
TraesCS7B01G082900.1	Wheat	plastid	35.58	37.0
TraesCS7D01G179200.1	Wheat	cytosol, plastid	36.54	36.36
TraesCS7D01G179300.1	Wheat	plastid	37.02	36.32
HORVU7Hr1G036500.7	Barley	plastid	35.58	36.27
TraesCS7B01G083100.1	Wheat	plastid	37.02	36.15
TraesCS7A01G236700.1	Wheat	plastid	36.54	35.85
TraesCS7D01G179500.1	Wheat	plastid	37.02	35.81
TraesCS7B01G083400.1	Wheat	plastid	36.54	35.68
TraesCS7D01G179100.1	Wheat	plastid	36.54	35.35
TraesCS7A01G177600.1	Wheat	plastid	36.54	35.35
TraesCS7D01G179000.1	Wheat	plastid	36.06	35.21
TraesCS7B01G083500.1	Wheat	mitochondrion	39.42	35.19
TraesCS7A01G177700.1	Wheat	cytosol, plastid	36.54	35.19
TraesCS7A01G177500.1	Wheat	cytosol, plastid	36.54	35.19
TraesCS7D01G232600.1	Wheat	plastid	35.1	34.93
TraesCS7D01G179600.1	Wheat	mitochondrion	38.94	34.62
TraesCS7B01G083200.2	Wheat	plastid	36.54	34.39
HORVU7Hr1G036570.2	Barley	cytosol	35.58	33.48
Zm00001d044874_P001	Maize	cytosol, plastid	33.17	33.17
OQU76071	Sorghum	plastid	31.73	32.67
EER89430	Sorghum	plastid	35.1	32.16
EER89431	Sorghum	plastid	33.17	31.8
HORVU7Hr1G036470.3	Barley	cytosol, nucleus	36.54	31.41
TraesCS7B01G130900.1	Wheat	plastid	24.04	30.86
TraesCS2B01G531300.1	Wheat	plastid	25.96	30.68
HORVU7Hr1G036540.3	Barley	mitochondrion, nucleus, plastid	37.98	30.62
OQU75930	Sorghum	plastid	32.21	30.04
OQU75612	Sorghum	plastid	32.21	30.04
TraesCS7A01G177800.1	Wheat	nucleus	31.73	28.7
HORVU6Hr1G077710.3	Barley	cytosol	33.65	25.64
KXG19616	Sorghum	plastid	32.69	25.28
Os06t0219500-00	Rice	mitochondrion	33.17	22.33
TraesCS5B01G123900.1	Wheat	plastid	24.52	21.34

Protein Annotations

EntrezGene:100253548	wikigene:100253548	MapMan:19.1.8.8	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	UniProt:A5AFX4
EMBL:AM425732	ProteinID:CAN66697	ProteinID:CAN66697.1	ProteinID:CBI24596	ProteinID:CBI24596.3	EMBL:FN595506
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EntrezGene:LOC100253548	wikigene:LOC100253548
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF238	SUPFAM:SSF49764	TIGR:TC51906
TIGR:TC71040	UniParc:UPI000151EAF3	ArrayExpress:VIT_16s0022g00510	EnsemblPlantsGene:VIT_16s0022g00510	EnsemblPlants:VIT_16s0022g00510.t01	unigene:Vvi.2537
RefSeq:XP_002267332	RefSeq:XP_002267332.1	RefSeq:XP_003634050	RefSeq:XP_003634050.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:11604847..11606213

Molecular Weight (calculated)

23736.9 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.721

Length

208 amino acids

Sequence
(BLAST)

001: MASSLALRSL LSKSLRPNFR ALATAPSVSR SFNTNAIRDY DDDERRLDVD RLSDRSFSRR GDFAPSSFSD VFDPFSPTRS LSQVLNLMDH FMDNPFLSTS
101: RGMGTGIRRS WDVKETDDAL HLRVDMPGLS KEDVKVSVEQ NTLTIQGEEK NETEDEESRR RYSSRIDLPE KLYKTGEIKA EMNKGVLKIV VPKLKEEERT
201: DVINVKVE

Best Arabidopsis Sequence Match ( AT4G25200.1 )
(BLAST)

001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN

Arabidopsis Description

HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.