Factsheet for VIT_01s0244g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93140	Soybean	plastid	70.16	73.62
VIT_14s0030g00770.t01	Wine grape	cytosol	6.87	73.08
KRH36369	Soybean	nucleus, plastid	65.1	68.05
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	69.98	67.78
AT5G13260.1	Thale cress	plastid	61.12	62.94
GSMUA_Achr4P00070_001	Banana	plastid	59.13	62.76
Solyc05g023770.2.1	Tomato	plastid	44.48	61.96
CDY09779	Canola	nucleus, plastid	60.04	61.71
CDX69654	Canola	nucleus, plastid	60.22	61.55
EES04143	Sorghum	plastid	60.22	59.25
Bra008842.1-P	Field mustard	nucleus, plastid	57.5	59.0
Os01t0928100-01	Rice	plasma membrane	60.04	58.25
TraesCS3A01G442300.2	Wheat	plastid	59.31	56.85
TraesCS3D01G435000.1	Wheat	plastid	59.13	56.67
GSMUA_Achr9P01070_001	Banana	cytosol	19.53	56.25
TraesCS3B01G476100.1	Wheat	plastid	58.23	55.81
GSMUA_Achr9P01060_001	Banana	plastid	38.34	54.78
HORVU3Hr1G096450.1	Barley	plastid	59.31	54.49
VIT_14s0030g00780.t01	Wine grape	cytosol	11.75	43.33
VIT_14s0030g00800.t01	Wine grape	cytosol, plastid	8.32	41.44
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	41.59	31.86
Os11t0520500-00	Rice	plasma membrane	38.7	30.92
Zm00001d049273_P001	Maize	nucleus	39.6	30.63
TraesCS4D01G120700.1	Wheat	nucleus	41.05	30.39
TraesCS4A01G192600.1	Wheat	nucleus	41.77	29.77
TraesCS4B01G122700.1	Wheat	nucleus	41.05	29.1
EES08547	Sorghum	nucleus	41.05	27.35

Protein Annotations

ArrayExpress:VIT_01s0244g00070	EMBL:FN596277	EnsemblPlants:VIT_01s0244g00070.t01	EnsemblPlantsGene:VIT_01s0244g00070	EntrezGene:100260846	EntrezGene:LOC100260846
ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF5	ProteinID:CBI35662	ProteinID:CBI35662.3	RefSeq:XP_002267942
RefSeq:XP_002267942.2	SEG:seg	unigene:Vvi.5545	UniParc:UPI0001BE4275	UniProt:D7TYT5	wikigene:100260846
wikigene:LOC100260846	MapMan:22.5.7.1.2	:	:	:	:

Description

No Description!

Coordinates

chr1:+:21636794..21647742

Molecular Weight (calculated)

61425.0 Da

IEP (calculated)

5.505

GRAVY (calculated)

-0.665

Length

553 amino acids

Sequence
(BLAST)

001: MDRTRSDSTV IGRQWSSESG ATGTSSPAMS PSLYHHSRSA SATGISNIKR TQNFAAKAAA QRLAQVMASQ TADDDEDDED DDLGFRYSAP PPPAFSRTVN
101: SGKPAVPASR VTRSPSPGLG RNFVEETPSV RSTSAGRPSM SLNAIPLVSP SRAPLRTPVP IPPIEPPNRQ KEKRFSSNVG HFNPKDTGDQ REASALRDEV
201: DMLQEENENI LDKLRLEEER CKDAEARVRE LEKQVAALGE GVSLEAKLLS RKEAALRQRE AALKDAKQSR DGEDEEIAFL RSELENAKDR AGAVLDQLHG
301: AKSEVKALRS MTQRMVLTQK EMEEVVLKRC WLARYWGLAA RHGICADIAV SKHEHWSSLA PLPFEVVISA GQKAKEEWRR GEDDPETRSK LVQDLNDLTG
401: DGNIESMLSV EMGLKELASL KVEEAIVLAL AQLRRPNSAR LSSSDLKSPG DPKYMEAFEL STEESEDVLF KEAWLTYFWR RAKAHGIEED IAKERLQFWI
501: SRSGHAPTSH DAVDVEQGLM ELRKLGIEHW LWEASRKEID EDSSASIARK SAI

Best Arabidopsis Sequence Match ( AT5G13260.1 )
(BLAST)

001: MERARTESPS YFRQWSGDSG TTNAAAVAPS SPARHHHARS SSVTNMSNVK RAQNVAAKAA AQRLAKVMAS QTNNDDDDDD DDDEVGGDDL GFRYGAPPPL
101: SFTRNPSSTI AKPKPVASSA VVPPPKISRS SSPANSPAVS VRASQPPVPP SKLRNQTTNP LPVATPKTEK RVLADIGHFN GKDSKDQHEA SALRDELDML
201: QEENDSILEK LRLEDEKCKE AEARVRELEK QVTSLGEGVS LEAKLLSRKE AALRQREAAL KDARQNRDGT NRETTALRSQ VETAKLETAA IVAQLQGAES
301: EVNGLRTMTH RMILTQKEME EVVLKRCWLA RYWGLASRYG ICSDIATSKY EYWSSLAPLP FEIVLSAGQK AKEESWEKES EENEKRSQLV QDINDLTGEG
401: NIESMLSVEM GLKELTSLKV EVAITITLAQ LRLANTTRLS DIELKSPGGP KITETLELSQ EESEDVLFKE AWLTYFWRRA QSLGIEVDTA RERLRFWISR
501: SAHSPSSHDA MEVEQGLTEL RKLRIERRLW EASRSSQ

Arabidopsis Description

Myosin [Source:UniProtKB/TrEMBL;Acc:Q8VZL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.