CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049273_P001	Maize	nucleus	60.6	70.35
Os11t0520500-00	Rice	plasma membrane	51.33	61.56
TraesCS4D01G120700.1	Wheat	nucleus	52.05	57.83
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	50.12	57.62
TraesCS4A01G192600.1	Wheat	nucleus	51.33	54.9
TraesCS4B01G122700.1	Wheat	nucleus	51.45	54.74
CDY64711	Canola	cytosol	18.19	51.71
CDX68503	Canola	nucleus	4.46	48.05
GSMUA_Achr9P01070_001	Banana	cytosol	10.96	47.4
KRG93140	Soybean	plastid	27.83	43.83
KRH36369	Soybean	nucleus, plastid	27.35	42.91
EES04143	Sorghum	plastid	28.67	42.35
KRH63847	Soybean	endoplasmic reticulum, nucleus	28.8	41.49
KRH54118	Soybean	endoplasmic reticulum	28.8	41.49
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	27.35	41.05
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	27.59	40.11
AT5G13260.1	Thale cress	plastid	25.54	39.48
CDY09779	Canola	nucleus, plastid	25.54	39.41
CDX69654	Canola	nucleus, plastid	25.42	39.0
Solyc03g118390.2.1	Tomato	nucleus	26.63	38.98
Bra008842.1-P	Field mustard	nucleus, plastid	24.94	38.4
CDY05877	Canola	nucleus, plastid	26.02	38.1
AT3G48860.2	Thale cress	nucleus	26.39	37.95
CDX80382	Canola	mitochondrion	24.58	37.57
Bra018031.1-P	Field mustard	mitochondrion	26.14	37.29
CDX88044	Canola	mitochondrion	24.34	37.27
Bra009703.1-P	Field mustard	mitochondrion	22.05	36.31
AT5G23700.3	Thale cress	mitochondrion, plastid	24.34	34.95
Solyc05g023770.2.1	Tomato	plastid	16.14	33.75
CDY34338	Canola	nucleus, plastid	25.3	32.26
CDY03383	Canola	nucleus, plastid	25.3	32.16
Bra013860.1-P	Field mustard	nucleus, plastid	26.14	31.09
KXG21299	Sorghum	mitochondrion	20.0	28.77
AT4G25070.2	Thale cress	plastid	26.27	28.42
CDY70607	Canola	nucleus	6.02	21.37

Protein Annotations

EnsemblPlants:EES08547	EnsemblPlantsGene:SORBI_3005G129400	EntrezGene:8058632	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF7
ProteinID:EES08547	ProteinID:EES08547.1	RefSeq:XP_002449559.1	SEG:seg	unigene:Sbi.495	UniParc:UPI0001A863AE
UniProt:C5Y2V8	MapMan:22.5.7.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:56035760..56042261

Molecular Weight (calculated)

91239.6 Da

IEP (calculated)

5.820

GRAVY (calculated)

-0.776

Length

830 amino acids

Sequence
(BLAST)

001: MDAPRGGGGG HTRRPGISGA AADQRRAAAA QAMARMEEMM LAHAGAAGEF SIILDAPLPS LQQYRRNPAP PSAAPSISKT NTSPLRRVAQ GGGGRDDGVP
101: ARLRRDGSGH DALGDPDTAA RTSRRGAVDG TGAGAARPRA GGARREREQE ETVEAPVRLT DPRSVRRPVS RGATPPPRST EVRRAAAQEE EERAVRREHE
201: QEDTVEAPVR LTDPRSVRKP VSRGATPPSR STEVRRVAVQ EEEERAVRRE REQEETVEAP VRLTDPRSVR RPVSRGATPP PRSRVAAQEE EEETPLQLLA
301: RGGRSSSTTR PAEVPQATVA PQASEAVAAA SLPATRPSSR RSRRDVGVKQ VVSEVASSVD SDVESIGRWS SRGSDDGGDE AVLLPRPLAA VVARDRSRSN
401: SPAISRNGVD SAAANRAPST GRSTFAPPVG VNVRPLQAVE IPNGTPRDRR AVYPDPTFAQ STRSRDSHDS STLTEELEML KDENVNLLEK LGLAEEKLRQ
501: SEARTTELEK QVANLGDGLS MEVKLMKRRE EMLVRKEQEI RKALISKNGK SEELTALQQQ LQSAREEASA AVKKLKEAES ETQELRTMTR RMVLSKEEME
601: EVVMKRCWLA RYWGLAVQYG IYPDISMSKH EYWSSLAPLP FEYVTSAGQR AKNGSETESN GLEDVDKLVH DLTVTAGEGN VETMLAVDKG LQELAFLKVE
701: DAVLFALAQH HRSNVAGAAD PDIKSSGDEK FTEAFDLSKE EEEDVQFKQA WLIYFWRRAK TNSVEEDIAE ERLQMWIDRH GQQPTSHDAV DVEQGIHELR
801: KLGIEQLLWE LSRHEANLTK DEPSDVEDLT

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.