Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05877 | Canola | nucleus, plastid | 84.23 | 85.71 |
| Bra018031.1-P | Field mustard | mitochondrion | 86.14 | 85.4 |
| CDY64711 | Canola | cytosol | 40.73 | 80.48 |
| CDX68503 | Canola | nucleus | 9.53 | 71.43 |
| AT5G23700.3 | Thale cress | mitochondrion, plastid | 68.8 | 68.69 |
| KRH63847 | Soybean | endoplasmic reticulum, nucleus | 61.87 | 61.98 |
| KRH54118 | Soybean | endoplasmic reticulum | 61.35 | 61.46 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 59.97 | 60.6 |
| GSMUA_Achr4P00070_001 | Banana | plastid | 54.25 | 60.08 |
| Solyc03g118390.2.1 | Tomato | nucleus | 58.06 | 59.08 |
| Os01t0928100-01 | Rice | plasma membrane | 56.15 | 56.84 |
| EES04143 | Sorghum | plastid | 54.77 | 56.23 |
| TraesCS3B01G476100.1 | Wheat | plastid | 53.38 | 53.38 |
| AT5G13260.1 | Thale cress | plastid | 49.57 | 53.26 |
| TraesCS3A01G442300.2 | Wheat | plastid | 53.21 | 53.21 |
| TraesCS3D01G435000.1 | Wheat | plastid | 52.69 | 52.69 |
| GSMUA_Achr9P01060_001 | Banana | plastid | 35.01 | 52.2 |
| HORVU3Hr1G096450.1 | Barley | plastid | 53.21 | 51.0 |
| GSMUA_Achr9P01070_001 | Banana | cytosol | 16.64 | 50.0 |
| AT4G25070.2 | Thale cress | plastid | 47.14 | 35.46 |
| Zm00001d049273_P001 | Maize | nucleus | 37.09 | 29.93 |
| HORVU4Hr1G023390.10 | Barley | cytosol, nucleus | 36.57 | 29.22 |
| Os11t0520500-00 | Rice | plasma membrane | 34.49 | 28.76 |
| TraesCS4D01G120700.1 | Wheat | nucleus | 37.09 | 28.65 |
| AT4G08630.1 | Thale cress | plastid | 38.65 | 27.88 |
| TraesCS4A01G192600.1 | Wheat | nucleus | 37.09 | 27.58 |
| TraesCS4B01G122700.1 | Wheat | nucleus | 36.92 | 27.31 |
| EES08547 | Sorghum | nucleus | 37.95 | 26.39 |
Protein Annotations
| MapMan:22.5.7.1.2 | EntrezGene:824047 | UniProt:A0A178V7R6 | ProteinID:AEE78464.1 | ProteinID:ANM63640.1 | ArrayExpress:AT3G48860 |
| EnsemblPlantsGene:AT3G48860 | RefSeq:AT3G48860 | TAIR:AT3G48860 | RefSeq:AT3G48860-TAIR-G | EnsemblPlants:AT3G48860.2 | TAIR:AT3G48860.2 |
| EMBL:AY093166 | EMBL:BT033150 | ProteinID:CAB87914.1 | ncoils:Coil | GO:GO:0000911 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009825 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016049 | GO:GO:0030136 | GO:GO:0031410 |
| GO:GO:0040007 | GO:GO:0040008 | GO:GO:0051301 | EMBL:KC533769 | RefSeq:NP_001325715.1 | RefSeq:NP_190455.2 |
| ProteinID:OAP01814.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 | UniProt:Q8RWD5 | UniParc:UPI000009C841 | SEG:seg |
Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
Coordinates
chr3:+:18117343..18122812
Molecular Weight (calculated)
63728.6 Da
IEP (calculated)
5.968
GRAVY (calculated)
-0.705
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.