Factsheet for Solyc03g118390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63847	Soybean	endoplasmic reticulum, nucleus	68.25	67.19
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	67.37	66.9
KRH54118	Soybean	endoplasmic reticulum	67.9	66.84
GSMUA_Achr4P00070_001	Banana	plastid	58.2	63.34
CDY64711	Canola	cytosol	32.28	62.67
CDX68503	Canola	nucleus	8.11	59.74
AT3G48860.2	Thale cress	nucleus	59.08	58.06
CDY05877	Canola	nucleus, plastid	57.67	57.67
GSMUA_Achr9P01070_001	Banana	cytosol	19.4	57.29
Bra018031.1-P	Field mustard	mitochondrion	58.02	56.53
Os01t0928100-01	Rice	plasma membrane	56.61	56.32
EES04143	Sorghum	plastid	55.73	56.23
AT5G23700.3	Thale cress	mitochondrion, plastid	54.85	53.81
GSMUA_Achr9P01060_001	Banana	plastid	36.51	53.49
TraesCS3B01G476100.1	Wheat	plastid	54.32	53.38
TraesCS3A01G442300.2	Wheat	plastid	54.32	53.38
CDX80382	Canola	mitochondrion	50.97	53.22
Solyc05g023770.2.1	Tomato	plastid	37.21	53.15
CDX88044	Canola	mitochondrion	50.79	53.14
TraesCS3D01G435000.1	Wheat	plastid	53.79	52.86
Bra009703.1-P	Field mustard	mitochondrion	46.91	52.78
HORVU3Hr1G096450.1	Barley	plastid	53.79	50.66
Solyc10g037930.1.1	Tomato	cytosol	13.58	47.83
CDY03383	Canola	nucleus, plastid	44.27	38.44
CDY34338	Canola	nucleus, plastid	43.92	38.25
Bra013860.1-P	Field mustard	nucleus, plastid	44.09	35.82
AT4G25070.2	Thale cress	plastid	45.15	33.38
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	39.51	31.02
Zm00001d049273_P001	Maize	nucleus	38.98	30.91
Os11t0520500-00	Rice	plasma membrane	37.21	30.49
TraesCS4D01G120700.1	Wheat	nucleus	38.45	29.18
TraesCS4A01G192600.1	Wheat	nucleus	39.33	28.74
TraesCS4B01G122700.1	Wheat	nucleus	38.98	28.33
EES08547	Sorghum	nucleus	38.98	26.63

Protein Annotations

EnsemblPlants:Solyc03g118390.2.1	EnsemblPlantsGene:Solyc03g118390.2	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	SEG:seg
UniParc:UPI0002767C3A	UniProt:K4BLZ0	MapMan:22.5.7.1.2	:	:	:

Description

No Description!

Coordinates

chr3:-:67278298..67287556

Molecular Weight (calculated)

63162.8 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.766

Length

567 amino acids

Sequence
(BLAST)

001: MDRRRTESPV YARQWSGGSS STGSSSPAGS PAHPRARLPP TVTGMSTIKR TQNVAAKAAA QRLAQVMASS HRPDEEEDDD DLGFRPPTAA FSTNDNRSNS
101: NSKNSGLTAI SLAKPNRSPS PSLGRNFMDH TPSVRSSSTG RPSSMSVRTS AAATTTGAIL QPSRSSVRTP VTIPPIEPPS NRLREKRFTP ELGRMDLKDS
201: GNDHETSALR DELDMLQEEN DIILDKLRRT EEQREESEAR VRLLEKQVAS LGEGLSLEAK LLTRKQEALR QREAALKAAQ QTKDGREDEI TILRTEIENL
301: KDDTANAMEQ LQEAEAEAKA LRTMTQRMIL THEEMEEVVL KRCWLSRYWG LAVQYGICAD IAGTKHEHWS SFAPLPFEVV ISAGQKAREE SWNGGDDSDR
401: SKRARDISDL SGEGNIESML SVEMALRELA SLKVEDAVIL ALAQHRRSNV VRQSSDPKSS VDPKLMDAYE LGQEESEDVL FKEAWLTYFW RRAKVHCVEE
501: DIAEERLQVW IGRSGQTPTT HDAVDVERGL IELRKLGIEQ QLWEASRKEI DHQPNNGKMS SDSEASP

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.