CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88044	Canola	mitochondrion	89.69	89.85
AT5G23700.3	Thale cress	mitochondrion, plastid	74.4	69.9
CDY64711	Canola	cytosol	34.44	64.04
CDY05877	Canola	nucleus, plastid	64.09	61.38
CDX68503	Canola	nucleus	8.47	59.74
KRH63847	Soybean	endoplasmic reticulum, nucleus	57.64	54.34
GSMUA_Achr4P00070_001	Banana	plastid	51.93	54.13
KRH54118	Soybean	endoplasmic reticulum	57.27	53.99
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	55.62	52.89
Solyc03g118390.2.1	Tomato	nucleus	53.22	50.97
EES04143	Sorghum	plastid	51.38	49.64
Os01t0928100-01	Rice	plasma membrane	51.38	48.95
CDY09779	Canola	nucleus, plastid	47.51	47.96
CDX69654	Canola	nucleus, plastid	47.7	47.87
TraesCS3B01G476100.1	Wheat	plastid	50.46	47.49
GSMUA_Achr9P01070_001	Banana	cytosol	16.76	47.4
TraesCS3A01G442300.2	Wheat	plastid	49.72	46.79
TraesCS3D01G435000.1	Wheat	plastid	49.72	46.79
HORVU3Hr1G096450.1	Barley	plastid	50.09	45.18
GSMUA_Achr9P01060_001	Banana	plastid	30.94	43.41
CDY70607	Canola	nucleus	16.94	39.32
CDY03383	Canola	nucleus, plastid	45.3	37.67
CDY34338	Canola	nucleus, plastid	44.75	37.33
CDY27806	Canola	plastid	40.15	27.91
CDY41922	Canola	plastid	40.88	27.82
Zm00001d049273_P001	Maize	nucleus	36.46	27.69
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	36.65	27.56
Os11t0520500-00	Rice	plasma membrane	34.44	27.02
TraesCS4D01G120700.1	Wheat	nucleus	36.46	26.51
TraesCS4A01G192600.1	Wheat	nucleus	36.46	25.52
TraesCS4B01G122700.1	Wheat	nucleus	36.28	25.26
EES08547	Sorghum	nucleus	37.57	24.58

Protein Annotations

EnsemblPlants:CDX80382	EnsemblPlantsGene:GSBRNA2T00133446001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	ProteinID:CDX80382
ProteinID:CDX80382.1	SEG:seg	UniParc:UPI0004EF00D2	MapMan:22.5.7.1.2	:	:

Description

BnaC07g30620D

Coordinates

chrLK031821:+:150262..153815

Molecular Weight (calculated)

61025.3 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.706

Length

543 amino acids

Sequence
(BLAST)

001: MDLRRAGSRS SNNIELRSTP ASPAHRNHLR GVGVGGYSPV HRNQNVATKA AAQRLAKVMA LQNKYDDDDD DDDDDDDEFK FAAPSAAING ISNVPAVPFA
101: SRNRSPSPAI SRYLNEHNTS VRSSSTGRSS TFGRSIAPNA SPVWMPPKAS LKPPLDPHFK DRDTRYYGDV PLVNSRDKGY RREASALRDE VEMLQEENEN
201: VLDKLHYAEE KRQAAEARAR ELEKQVAFLG EGVSLEAKLI SRKEAALRQR EAALKAANEK EDEKKEELVS LRSKIQFMKD DAVKAAERLQ EAESEANDLR
301: TMTQRTVLTE DEMEEVALKR CWLARYWGLA AQHGICADIA PSRHEKWSAL APLPFELVIS AAQRAKELSG DQGYDESKTE RFVSELTGEG NIESMLSVEM
401: GLRELASLKV EDAVMLAVSQ NRTPSFVRQE SKGNRELRFV EAYELKEEEQ EDVVFKQAWL LYFWARAKLL GVEEDIADER LQFWISCSEG ESTTSHDAVD
501: VERGMLELRK LGIEQQLWEA CRKETEHLPP SSSPTSTLAN LDT

Best Arabidopsis Sequence Match ( AT5G23700.2 )
(BLAST)

001: MDLRRPSSPV YGRQWSRSSN GTESRSPSMS PAHRNQIGGV GGLSTVKRTQ NVATKAAAQR LAKVMALQNK DNEEDDDDDD HEFKFAPPSS GPINGSFARR
101: NRSHSPAIGR NITEQVTSVR SSSTGRPSTF SRSSTPNASP LWMPPKASLK PPVIIPPIDH SFKDRDQRYF GDVPRLVNSR DKGYQREASA LRDEVDMLQE
201: ENEIVLEKLH RAEEMREAAE ARARELEKQV ASLGEGVSLE AKLLSRKEAA LRQREAALKA ANEKKDGKKE EVVSLRSEIQ ILKDEAETAA ECLQEAESEA
301: KALRIMTQRM VLTQDEMEEV ALKRCWLARY WGLAVQHGIC ADIAPSRHEK WSALAPLPFE LVISAAQKTK ELSRDKGGSD QSKTARFLSD LPGEGNIESM
401: LSVEMGLREL ASLKVEDAVM LAFAQKRTPS LVRQDSKGHG ELSFVESYEI KEGEQEDVAF KQAWLMYFWG RAKLHSVEED IADERFQFWT SRSEGKSPTS
501: QDAVDVERGL LELRKLGVEQ QLWEACRKET DQLLPSSSPT STLSNHNLDS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G23700]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.