Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os01t0928100-01 | Rice | plasma membrane | 85.94 | 84.74 |
TraesCS3A01G442300.2 | Wheat | plastid | 86.3 | 84.06 |
TraesCS3D01G435000.1 | Wheat | plastid | 86.3 | 84.06 |
TraesCS3B01G476100.1 | Wheat | plastid | 84.34 | 82.15 |
HORVU3Hr1G096450.1 | Barley | plastid | 86.65 | 80.9 |
GSMUA_Achr4P00070_001 | Banana | plastid | 63.52 | 68.52 |
VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 61.92 | 60.95 |
VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 59.25 | 60.22 |
KRG93140 | Soybean | plastid | 56.05 | 59.77 |
KRH63847 | Soybean | endoplasmic reticulum, nucleus | 61.21 | 59.72 |
KRH54118 | Soybean | endoplasmic reticulum | 60.68 | 59.2 |
KRH36369 | Soybean | nucleus, plastid | 55.16 | 58.6 |
CDY64711 | Canola | cytosol | 29.72 | 57.19 |
Solyc03g118390.2.1 | Tomato | nucleus | 56.23 | 55.73 |
CDY05877 | Canola | nucleus, plastid | 56.23 | 55.73 |
AT3G48860.2 | Thale cress | nucleus | 56.23 | 54.77 |
AT5G13260.1 | Thale cress | plastid | 52.31 | 54.75 |
Bra018031.1-P | Field mustard | mitochondrion | 55.87 | 53.95 |
AT5G23700.3 | Thale cress | mitochondrion, plastid | 55.34 | 53.81 |
Solyc05g023770.2.1 | Tomato | plastid | 37.72 | 53.4 |
CDY09779 | Canola | nucleus, plastid | 51.07 | 53.35 |
CDX69654 | Canola | nucleus, plastid | 51.07 | 53.05 |
Bra009703.1-P | Field mustard | mitochondrion | 46.62 | 51.98 |
CDX68503 | Canola | nucleus | 7.12 | 51.95 |
CDX80382 | Canola | mitochondrion | 49.64 | 51.38 |
CDX88044 | Canola | mitochondrion | 49.11 | 50.92 |
Bra008842.1-P | Field mustard | nucleus, plastid | 48.75 | 50.83 |
CDY70607 | Canola | nucleus | 16.01 | 38.46 |
CDY34338 | Canola | nucleus, plastid | 42.7 | 36.87 |
CDY03383 | Canola | nucleus, plastid | 42.35 | 36.45 |
KXG21299 | Sorghum | mitochondrion | 35.77 | 34.84 |
Bra013860.1-P | Field mustard | nucleus, plastid | 42.53 | 34.24 |
AT4G25070.2 | Thale cress | plastid | 43.77 | 32.07 |
EES08547 | Sorghum | nucleus | 42.35 | 28.67 |
Protein Annotations
EnsemblPlants:EES04143 | EnsemblPlantsGene:SORBI_3003G412300 | EntrezGene:8059394 | ncoils:Coil | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 |
ProteinID:EES04143 | ProteinID:EES04143.1 | RefSeq:XP_002459023.1 | SEG:seg | SUPFAM:SSF57997 | unigene:Sbi.12841 |
UniParc:UPI0001A85628 | UniProt:C5XH04 | MapMan:22.5.7.1.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:71957823..71965868
Molecular Weight (calculated)
61270.8 Da
IEP (calculated)
5.893
GRAVY (calculated)
-0.635
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLRAGSPV YGRQRSGSST GSSSPGGVSP SHHRSSSTSS AASAAGAAGI SNVRRTQNVA ARAAAARLAQ VMASQNAAAA AGDDDDDDDY AADHPPPPPG
101: RFGSGRVAHG SNGVSLLGRS ARSPSPALGR NIVEPPPTVR SSSAGRPAVA SRPTTTVVPP IKTNTTLRTP SPIPPVSVEP PVDRTRPKRF DAGLHNSRES
201: GLKREASTLH DELDMLQEEN ESVLEKLRLA EERCEEAEAR AKELEKQVAA LGEGVSLEAR LLSRKEAALK QREAALKAAR ESKDGRDGEV TTLRHELESA
301: KEEVASAMDQ LKEAESETKA LRSMTQRMVL TQEEMEEVVL KRCWLARYWG LAVQYGVYPE IAVSKYEHWS SLAPLPLEIV LSAGQKAKEE PRKQGENGQG
401: RNKLAREMSD VMGEGNIESM LSVEMGLREL SSLKVEDAVV VALGQHRRPS IVRQFTSDFK SPGEPKYLEA FDLSPEEAED VSFKQAWLIY FWRRAKTHGV
501: EEDIADDRLQ FWIGRNAQAP NSHDAIDVER GLTELRKLGI EQQLWEGSRA DIDQASLAME NQ
101: RFGSGRVAHG SNGVSLLGRS ARSPSPALGR NIVEPPPTVR SSSAGRPAVA SRPTTTVVPP IKTNTTLRTP SPIPPVSVEP PVDRTRPKRF DAGLHNSRES
201: GLKREASTLH DELDMLQEEN ESVLEKLRLA EERCEEAEAR AKELEKQVAA LGEGVSLEAR LLSRKEAALK QREAALKAAR ESKDGRDGEV TTLRHELESA
301: KEEVASAMDQ LKEAESETKA LRSMTQRMVL TQEEMEEVVL KRCWLARYWG LAVQYGVYPE IAVSKYEHWS SLAPLPLEIV LSAGQKAKEE PRKQGENGQG
401: RNKLAREMSD VMGEGNIESM LSVEMGLREL SSLKVEDAVV VALGQHRRPS IVRQFTSDFK SPGEPKYLEA FDLSPEEAED VSFKQAWLIY FWRRAKTHGV
501: EEDIADDRLQ FWIGRNAQAP NSHDAIDVER GLTELRKLGI EQQLWEGSRA DIDQASLAME NQ
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.