CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54118	Soybean	endoplasmic reticulum	97.57	97.57
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	71.88	72.5
Solyc03g118390.2.1	Tomato	nucleus	67.19	68.25
GSMUA_Achr4P00070_001	Banana	plastid	60.94	67.37
CDY64711	Canola	cytosol	32.64	64.38
KRG93140	Soybean	plastid	58.85	64.33
KRH36369	Soybean	nucleus, plastid	58.51	63.71
AT3G48860.2	Thale cress	nucleus	61.98	61.87
CDY05877	Canola	nucleus, plastid	60.59	61.55
EES04143	Sorghum	plastid	59.72	61.21
Os01t0928100-01	Rice	plasma membrane	59.72	60.35
Bra018031.1-P	Field mustard	mitochondrion	60.42	59.79
CDX68503	Canola	nucleus	7.81	58.44
GSMUA_Achr9P01060_001	Banana	plastid	39.24	58.4
AT5G23700.3	Thale cress	mitochondrion, plastid	58.33	58.13
TraesCS3A01G442300.2	Wheat	plastid	57.99	57.89
TraesCS3D01G435000.1	Wheat	plastid	57.99	57.89
CDX80382	Canola	mitochondrion	54.34	57.64
TraesCS3B01G476100.1	Wheat	plastid	57.47	57.37
CDX88044	Canola	mitochondrion	53.65	57.01
Bra009703.1-P	Field mustard	mitochondrion	49.48	56.55
GSMUA_Achr9P01070_001	Banana	cytosol	18.75	56.25
HORVU3Hr1G096450.1	Barley	plastid	58.16	55.65
CDY03383	Canola	nucleus, plastid	45.83	40.43
KRG96906	Soybean	nucleus, plastid	44.79	40.38
CDY34338	Canola	nucleus, plastid	45.49	40.25
KRH68645	Soybean	nucleus, plastid	44.1	38.72
Bra013860.1-P	Field mustard	nucleus, plastid	44.97	37.11
AT4G25070.2	Thale cress	plastid	47.4	35.59
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	41.84	33.38
Zm00001d049273_P001	Maize	nucleus	40.8	32.87
Os11t0520500-00	Rice	plasma membrane	38.72	32.23
TraesCS4D01G120700.1	Wheat	nucleus	40.97	31.59
TraesCS4A01G192600.1	Wheat	nucleus	42.01	31.19
TraesCS4B01G122700.1	Wheat	nucleus	41.32	30.51
EES08547	Sorghum	nucleus	41.49	28.8

Protein Annotations

EMBL:ACUP02002719	EnsemblPlants:KRH63847	EnsemblPlantsGene:GLYMA_04G200100	EntrezGene:100795139	ncoils:Coil	PANTHER:PTHR31762
PANTHER:PTHR31762:SF4	ProteinID:KRH63847	ProteinID:KRH63847.1	SEG:seg	UniParc:UPI00023C0B88	UniProt:I1JXP5
MapMan:22.5.7.1.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:47260087..47268693

Molecular Weight (calculated)

63480.9 Da

IEP (calculated)

5.748

GRAVY (calculated)

-0.695

Length

576 amino acids

Sequence
(BLAST)

001: MDRRRNASPV YARQWSGGSS STGSSSPAMS PAHPQSRLGP TSATGLSTVK RTQNVAAKAA AQRLARVMAS QNTTADDGED DDDLDFRFSA PSPASLSSFS
101: SNSGSNRSAS TNATAIPPIS VARPNRSPSP ALGRNFVEHT HSVRSTSAGR PAVSVRSAAV VPPNKSTLRT PMAIPPIDPP TNRNREKRFT SDMSIRPLNS
201: KDTGDQREAS ALRDELDMLQ EENEDLLEKL RQAEEKRQEV EARTRELEKQ VASLGEGVSL EAKLLSRKEA ALRQREAALK AAQQTQSGRD EDITALRVEI
301: QNLKDDATAA LEQQQEAEAE AKSLRTMTQR MILTQEEMEE VVLKRCWLAR YWGLAVKHGI CADIAQSKHE HWSSLAPLPF ELVISAGQKA KEESWNKSAD
401: GPDRSKLVRD LNDLAGEGNI ESMLSVEMGL RELASLKVED AVVLALAQHR RPNSVRQSVL DSKSRGDAKY SEAFELSEEE AEDVLFKEAW LTYFWRRALF
501: HGVEEDIAEE RLQFWIARSG QSPSSHDAVD VERGLLELRK LSIEQQLWEA SRKGIDQLQG SADANHKHAS DSDASS

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.