CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009703.1-P	Field mustard	mitochondrion	85.79	92.26
CDX80382	Canola	mitochondrion	89.85	89.69
AT5G23700.3	Thale cress	mitochondrion, plastid	71.77	67.3
CDY64711	Canola	cytosol	34.5	64.04
CDY05877	Canola	nucleus, plastid	63.65	60.85
CDX68503	Canola	nucleus	8.12	57.14
KRH63847	Soybean	endoplasmic reticulum, nucleus	57.01	53.65
GSMUA_Achr4P00070_001	Banana	plastid	51.48	53.55
KRH54118	Soybean	endoplasmic reticulum	56.64	53.3
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	55.54	52.71
Solyc03g118390.2.1	Tomato	nucleus	53.14	50.79
EES04143	Sorghum	plastid	50.92	49.11
GSMUA_Achr9P01070_001	Banana	cytosol	17.16	48.44
Os01t0928100-01	Rice	plasma membrane	50.74	48.25
TraesCS3B01G476100.1	Wheat	plastid	50.18	47.14
CDY09779	Canola	nucleus, plastid	46.68	47.03
CDX69654	Canola	nucleus, plastid	46.86	46.95
TraesCS3A01G442300.2	Wheat	plastid	49.45	46.45
TraesCS3D01G435000.1	Wheat	plastid	49.45	46.45
HORVU3Hr1G096450.1	Barley	plastid	49.82	44.85
GSMUA_Achr9P01060_001	Banana	plastid	30.81	43.15
CDY70607	Canola	nucleus	16.42	38.03
CDY03383	Canola	nucleus, plastid	45.57	37.83
CDY34338	Canola	nucleus, plastid	44.83	37.33
CDY27806	Canola	plastid	40.41	28.04
Zm00001d049273_P001	Maize	nucleus	36.9	27.97
CDY41922	Canola	plastid	41.14	27.94
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	36.35	27.29
Os11t0520500-00	Rice	plasma membrane	34.5	27.02
TraesCS4D01G120700.1	Wheat	nucleus	36.16	26.24
TraesCS4A01G192600.1	Wheat	nucleus	36.16	25.26
TraesCS4B01G122700.1	Wheat	nucleus	35.98	25.0
EES08547	Sorghum	nucleus	37.27	24.34

Protein Annotations

EnsemblPlants:CDX88044	EnsemblPlantsGene:GSBRNA2T00147456001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	ProteinID:CDX88044
ProteinID:CDX88044.1	SEG:seg	UniParc:UPI0004EED672	MapMan:22.5.7.1.2	:	:

Description

BnaA06g26350D

Coordinates

chrLK031854:+:276535..280313

Molecular Weight (calculated)

60784.1 Da

IEP (calculated)

4.999

GRAVY (calculated)

-0.689

Length

542 amino acids

Sequence
(BLAST)

001: MDLRRAGSRS SNNIELRSTP ASPAHRNHLG GVGVGGYSPA HRNLNVATKA AAQRLAKVMA LQHKYDDDDD DDDDDDEFKF ANPSSAINGI SNVPAVPFAS
101: RNRSPSPAIS RYLNEQNTSV RSSSTGRSST FGRSIAPNAS PVWMSPKASL KPPLDPHFKD RDTRYYGDVP LVNSRDKGYR REASALRDEV EMLQEENENV
201: LDKLHYAEEK RQAAEARARE LEKQVAFLGE GVSLEAKLIS RKEAALRQRE AALKAANEKE DEKKEELVSL RSKIQILKDE AVKPAERLQE AESEANDLRT
301: MTQRTVLTED EMEEVALKRC WLARYWGLAV QHGICADIAP SRHEKWSALA PLPVELVISA AQRAKELSGD QGYDQTKTER FVSELTGEGN IESMLSVEMG
401: LRELASLKVE DAVMLAVSQN RTPSFVRQES KGNRELKFVE AYELKEEEQE DVVFKQAWLL YFWARAKLLG VEEDIADERL QFWISCSEGE STTSHDAVDV
501: ERGMLELRKL GIEQQLWEAC RKETEHLPPS SSPTSTLANL DT

Best Arabidopsis Sequence Match ( AT5G23700.2 )
(BLAST)

001: MDLRRPSSPV YGRQWSRSSN GTESRSPSMS PAHRNQIGGV GGLSTVKRTQ NVATKAAAQR LAKVMALQNK DNEEDDDDDD HEFKFAPPSS GPINGSFARR
101: NRSHSPAIGR NITEQVTSVR SSSTGRPSTF SRSSTPNASP LWMPPKASLK PPVIIPPIDH SFKDRDQRYF GDVPRLVNSR DKGYQREASA LRDEVDMLQE
201: ENEIVLEKLH RAEEMREAAE ARARELEKQV ASLGEGVSLE AKLLSRKEAA LRQREAALKA ANEKKDGKKE EVVSLRSEIQ ILKDEAETAA ECLQEAESEA
301: KALRIMTQRM VLTQDEMEEV ALKRCWLARY WGLAVQHGIC ADIAPSRHEK WSALAPLPFE LVISAAQKTK ELSRDKGGSD QSKTARFLSD LPGEGNIESM
401: LSVEMGLREL ASLKVEDAVM LAFAQKRTPS LVRQDSKGHG ELSFVESYEI KEGEQEDVAF KQAWLMYFWG RAKLHSVEED IADERFQFWT SRSEGKSPTS
501: QDAVDVERGL LELRKLGVEQ QLWEACRKET DQLLPSSSPT STLSNHNLDS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G23700]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.