CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64711	Canola	cytosol	83.12	21.92
GSMUA_Achr9P01070_001	Banana	cytosol	53.25	21.35
CDY05877	Canola	nucleus, plastid	83.12	11.29
AT3G48860.2	Thale cress	nucleus	71.43	9.53
CDX80382	Canola	mitochondrion	59.74	8.47
GSMUA_Achr4P00070_001	Banana	plastid	57.14	8.45
CDX88044	Canola	mitochondrion	57.14	8.12
Solyc03g118390.2.1	Tomato	nucleus	59.74	8.11
KRH63847	Soybean	endoplasmic reticulum, nucleus	58.44	7.81
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	57.14	7.71
KRH54118	Soybean	endoplasmic reticulum	57.14	7.64
EES04143	Sorghum	plastid	51.95	7.12
Os01t0928100-01	Rice	plasma membrane	51.95	7.02
TraesCS3B01G476100.1	Wheat	plastid	49.35	6.59
TraesCS3D01G435000.1	Wheat	plastid	49.35	6.59
TraesCS3A01G442300.2	Wheat	plastid	48.05	6.41
HORVU3Hr1G096450.1	Barley	plastid	49.35	6.31
CDY09779	Canola	nucleus, plastid	41.56	5.95
CDX69654	Canola	nucleus, plastid	41.56	5.91
CDY03383	Canola	nucleus, plastid	49.35	5.82
CDY34338	Canola	nucleus, plastid	48.05	5.68
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	49.35	5.26
Zm00001d049273_P001	Maize	nucleus	48.05	5.17
TraesCS4D01G120700.1	Wheat	nucleus	49.35	5.09
TraesCS4A01G192600.1	Wheat	nucleus	49.35	4.9
TraesCS4B01G122700.1	Wheat	nucleus	49.35	4.87
EES08547	Sorghum	nucleus	48.05	4.46
CDY27806	Canola	plastid	42.86	4.23
CDY41922	Canola	plastid	42.86	4.14
Os11t0520500-00	Rice	plasma membrane	33.77	3.76
GSMUA_Achr9P01060_001	Banana	plastid	3.9	0.78
CDY70607	Canola	nucleus	1.3	0.43

Protein Annotations

EnsemblPlants:CDX68503	EnsemblPlantsGene:GSBRNA2T00126026001	PANTHER:PTHR31762	ProteinID:CDX68503	ProteinID:CDX68503.1	UniParc:UPI0004EB3094
MapMan:35.1	:	:	:	:	:

Description

BnaC01g25810D

Coordinates

chrLK031788:+:2920538..2920862

Molecular Weight (calculated)

8951.3 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.825

Length

77 amino acids

Sequence
(BLAST)

1: MYFWGRAKLH GVEEDIAEER LHLWISRSSG KSTTSHDSLD VERGLIEQQL WEASRREIDQ LPSPTDREID QLLDADS

Best Arabidopsis Sequence Match ( AT3G48860.3 )
(BLAST)

001: MSARSTTPTP IPNLMPPSRV SVKTPVSIPP LDPPTRSRDK RFFADVPSVN SKEKGDQREA SALRDELDML QEENENVLEK LRRAEEKRVE AEARAKELEK
101: QVASLGEGVS LEAKLLSRKE AALRQREAAL NVAKQKKSGK DEEIVSLRSE LENLKDEATT AAERLQEAES EAKSLRTMTQ RMILTQDEME EVVLKRCWLA
201: RYWGLAVQHG ICADIAPSRQ EHWSKLAPLP FELVTSAAQK AKELSWDKGG NDRSKAARDL SDLTGEGNIE SMLSVEMGLR ELASLKVEDA VVLIFAQQRK
301: LSLVRHTVSD SKGHGESRFI DAYELGEAEQ EDVAFKQAWL MYFWGRAKLH GVEDDIAEER VQLWISRSSG KSQTTSHDAL DVERGLIELR KLGIEQQLWE
401: ASRREIDQLP SPTSSNHDLD ADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.