CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05877	Canola	nucleus, plastid	65.38	26.98
Solyc05g023770.2.1	Tomato	plastid	38.46	22.67
GSMUA_Achr9P01060_001	Banana	plastid	33.33	20.16
GSMUA_Achr4P00070_001	Banana	plastid	38.03	17.08
CDX80382	Canola	mitochondrion	39.32	16.94
CDX88044	Canola	mitochondrion	38.03	16.42
EES04143	Sorghum	plastid	38.46	16.01
TraesCS3A01G442300.2	Wheat	plastid	38.03	15.42
Os01t0928100-01	Rice	plasma membrane	37.18	15.26
TraesCS3D01G435000.1	Wheat	plastid	37.61	15.25
TraesCS3B01G476100.1	Wheat	plastid	36.75	14.9
HORVU3Hr1G096450.1	Barley	plastid	37.61	14.62
CDX69654	Canola	nucleus, plastid	28.63	12.38
CDY09779	Canola	nucleus, plastid	27.78	12.08
CDY03383	Canola	nucleus, plastid	27.78	9.95
CDY34338	Canola	nucleus, plastid	27.35	9.83
CDY27806	Canola	plastid	31.62	9.48
CDY41922	Canola	plastid	31.2	9.15
Os11t0520500-00	Rice	plasma membrane	20.09	6.79
Zm00001d049273_P001	Maize	nucleus	20.09	6.57
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	20.09	6.51
TraesCS4D01G120700.1	Wheat	nucleus	20.09	6.29
TraesCS4A01G192600.1	Wheat	nucleus	20.51	6.19
TraesCS4B01G122700.1	Wheat	nucleus	20.09	6.03
EES08547	Sorghum	nucleus	21.37	6.02
CDY64711	Canola	cytosol	3.42	2.74
GSMUA_Achr9P01070_001	Banana	cytosol	2.14	2.6
CDX68503	Canola	nucleus	0.43	1.3

Protein Annotations

EnsemblPlants:CDY70607	EnsemblPlantsGene:GSBRNA2T00004656001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	ProteinID:CDY70607
ProteinID:CDY70607.1	SEG:seg	UniParc:UPI0004EDBF96	UniProt:A0A078JY70	MapMan:35.1	:

Description

BnaAnng34330DBnaAnng34330D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JY70]

Coordinates

chrLK042669:-:54..1616

Molecular Weight (calculated)

25666.6 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.562

Length

234 amino acids

Sequence
(BLAST)

001: MALQNKDNGD EDEEDEDEDL SLRFAPTSLK PARHAPSSLS STGSNNSNGD SKPPAVSFAL RNRSPSPALG RNFVEQVPSV RSASAGRPSM STRSTTPTPT
101: PNLMPPSRVA VKAPSAIPPL DPPTRNRDKR FFADLPSVNS KEKGDQREAS ALRDELDMLQ EENEIVLEKL RRAEEKKAEA EARAKELEKQ VLEPVVLSSS
201: FFLLMLLLKI PKGKYSPLVC IPLLTILIRL KSAI

Best Arabidopsis Sequence Match ( AT3G48860.1 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYGNG KVSLTLFSLF STLM

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.