Factsheet for TraesCS4B01G122700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G192600.1	Wheat	nucleus	92.31	92.78
TraesCS4D01G120700.1	Wheat	nucleus	88.59	92.5
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	81.79	88.37
Zm00001d049273_P001	Maize	nucleus	56.92	62.1
Os11t0520500-00	Rice	plasma membrane	53.33	60.12
CDY64711	Canola	cytosol	19.62	52.4
EES08547	Sorghum	nucleus	54.74	51.45
GSMUA_Achr9P01070_001	Banana	cytosol	12.18	49.48
CDX68503	Canola	nucleus	4.87	49.35
KRG93140	Soybean	plastid	30.26	44.78
KRH36369	Soybean	nucleus, plastid	29.87	44.05
KRH63847	Soybean	endoplasmic reticulum, nucleus	30.51	41.32
KRH54118	Soybean	endoplasmic reticulum	30.51	41.32
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	29.1	41.05
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	29.62	40.46
CDY09779	Canola	nucleus, plastid	27.56	39.96
CDX69654	Canola	nucleus, plastid	27.31	39.37
TraesCS3B01G476100.1	Wheat	plastid	28.97	39.17
Solyc03g118390.2.1	Tomato	nucleus	28.33	38.98
Bra008842.1-P	Field mustard	nucleus, plastid	26.92	38.96
AT5G13260.1	Thale cress	plastid	26.67	38.73
CDY05877	Canola	nucleus, plastid	27.31	37.57
AT3G48860.2	Thale cress	nucleus	27.31	36.92
Bra018031.1-P	Field mustard	mitochondrion	27.44	36.77
CDX80382	Canola	mitochondrion	25.26	36.28
CDX88044	Canola	mitochondrion	25.0	35.98
Bra009703.1-P	Field mustard	mitochondrion	22.82	35.32
Solyc05g023770.2.1	Tomato	plastid	17.44	34.26
AT5G23700.3	Thale cress	mitochondrion, plastid	25.38	34.26
TraesCS1B01G112600.1	Wheat	plastid	22.82	33.21
CDY03383	Canola	nucleus, plastid	27.31	32.62
CDY34338	Canola	nucleus, plastid	27.18	32.57
Bra013860.1-P	Field mustard	nucleus, plastid	26.41	29.51
AT4G25070.2	Thale cress	plastid	27.18	27.64
CDY70607	Canola	nucleus	6.03	20.09

Protein Annotations

EnsemblPlants:TraesCS4B01G122700.1	EnsemblPlantsGene:TraesCS4B01G122700	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF7	SEG:seg
MapMan:22.5.7.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:145840779..145848310

Molecular Weight (calculated)

85723.4 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.700

Length

780 amino acids

Sequence
(BLAST)

001: MDAGRAGGGG PARRPRPAAA ASDPRRAAAA REAMLRMEEV MMAHAGAAGE FSMIIEAPLP NLQRYRRNQT PPAAPSSDSP SRRRGGPHDA GARDDVPTRL
101: RREGSVTEDI GNARGVRGGE DIGNADDARS RRGTGDARGA RPASTRGREE GTEAPVRMRD PRRESGRLSA PPGRVVEAQP DVASAVEEET PLQQLSHEVR
201: SSSADRRVEA ALEADAMAAR PSSRGSRREG SRDDVLNAIV AEPAVEALAA RPLSRRSRRE GSGEDVVNPI VAEPAVEALA VRPPSRRSRR EGSGEAVVNA
301: IVAEPAVEVE VEADVDSVGW GSSRGSEDGG EEPVALPKPL ESILTGGRSR SNSPAISRNG VDSGVAKRAQ STGRSSFVPP VGANVRPLQA VEMPNGTPRE
401: RRTIYPDPTF AQSGRSRDSH DSSTLTEEVE MLKDENVNLL EKLGLAEEKF RQSEARTREL EKQVANLGDG LSMEVKLMKR REEMLVRKEQ EIRKALISKN
501: DKSEEITTLQ QQLQSASEKA AVAERKLNEA ESETKALRTM TQRMILSKEE MEEVVMKRCW LARYWGLAVQ YGIYPDISMS KYEYWSSFAP LPLEYVTSAG
601: LRAKDGGSNE LEETDMLLHD LTVTAGEGNI ETMLAVDKGL KELAFLKVED AVLIALAQHH RPNVAELSDP DIKSSGDEKF TEAFDLSKEE EEDVLFKQAW
701: LMYFWRRAKI HNVEEDIAEE RLQMWVDRHG QQPTSHDAVD VEQGIHELRK LGIEQLLWEF SRQEVNVAEG ELSDAEDDLT

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.