Factsheet for HORVU4Hr1G023390.10

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G192600.1	Wheat	nucleus	89.89	83.63
TraesCS4B01G122700.1	Wheat	nucleus	88.37	81.79
TraesCS4D01G120700.1	Wheat	nucleus	82.27	79.52
Zm00001d049273_P001	Maize	nucleus	60.39	60.98
Os11t0520500-00	Rice	plasma membrane	55.82	58.24
CDY64711	Canola	cytosol	20.91	51.71
EES08547	Sorghum	nucleus	57.62	50.12
GSMUA_Achr9P01070_001	Banana	cytosol	13.3	50.0
CDX68503	Canola	nucleus	5.26	49.35
KRG93140	Soybean	plastid	32.41	44.4
KRH36369	Soybean	nucleus, plastid	32.41	44.23
KRH63847	Soybean	endoplasmic reticulum, nucleus	33.38	41.84
KRH54118	Soybean	endoplasmic reticulum	33.38	41.84
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	31.86	41.59
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	32.13	40.63
CDY09779	Canola	nucleus, plastid	30.19	40.52
CDX69654	Canola	nucleus, plastid	29.78	39.74
Solyc03g118390.2.1	Tomato	nucleus	31.02	39.51
Bra008842.1-P	Field mustard	nucleus, plastid	29.36	39.33
AT5G13260.1	Thale cress	plastid	28.95	38.92
HORVU3Hr1G096450.1	Barley	plastid	32.41	38.87
CDY05877	Canola	nucleus, plastid	29.5	37.57
Bra018031.1-P	Field mustard	mitochondrion	29.64	36.77
CDX80382	Canola	mitochondrion	27.56	36.65
AT3G48860.2	Thale cress	nucleus	29.22	36.57
CDX88044	Canola	mitochondrion	27.29	36.35
Bra009703.1-P	Field mustard	mitochondrion	24.93	35.71
AT5G23700.3	Thale cress	mitochondrion, plastid	27.56	34.43
Solyc05g023770.2.1	Tomato	plastid	18.84	34.26
CDY34338	Canola	nucleus, plastid	29.22	32.41
CDY03383	Canola	nucleus, plastid	29.22	32.31
Bra013860.1-P	Field mustard	nucleus, plastid	28.25	29.23
AT4G25070.2	Thale cress	plastid	28.53	26.86
CDY70607	Canola	nucleus	6.51	20.09

Protein Annotations

EnsemblPlants:HORVU4Hr1G023390.10	EnsemblPlantsGene:HORVU4Hr1G023390	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF7	SEG:seg
UniParc:UPI000B476474	UniProt:A0A287NJH9	MapMan:22.5.7.1.2	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:126094727..126105564

Molecular Weight (calculated)

79761.2 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.733

Length

722 amino acids

Sequence
(BLAST)

001: RTGQTKVKAT EMDAGRAGAR RPRPAAAASD PRRAAAAREA MLRMEEVMLA HAGSAGEFSM IIEAPLPNLQ RYRRNPTPPA APSSGSPSRR RGGPHDAGSR
101: DDVPTRLRRE GSVTEDIGSA RGVRGGEDMG YADDARSRRG TLDARAARPA SAGGPEEETE APVRLRDPRR ERGRVSAPPA RIVEVQPDVE AVMEEETPLQ
201: QLSRGARSSS ADRRVEAAVE AEAMAARPSS RGSRREGTGS GENAIVAEPA VEVEADVESV GWSSSHGSED GREEAVPLAK PLESIITGGR SRSNSPAISR
301: NGVDSGVANR AQSTGRSSFV PPVGANVRPV QAVEVPNGTP RERRTIYPDP TFAQSGRSRD SHDSSTLTEE VEMLKDENVN LLEKLGLAEE KFRQSEARTR
401: ELEKQVANLG DGLSMEVKLM KRREEMLVRK EQEIRKALIS KNDKSEEITT LQQQLQSASE KAAVSERKLN EAESETKALR TMTQRIILSK EEMEEVVMKR
501: CWLARYWGLA VQYGIYPDIS MSKYEYWSSF APLPLEYVTS AGLRAKDGGS NDLEETDMLV HDLTATAGEG NIETMLAVDK GLKELAFLKV EDAVLIALAQ
601: HHRPNVAELS DPDIKSSGDE KFTEAFDLSK EEEEDVLFKQ AWLMYFWRRA KTHNVEEDIA EERLQMWVDR HGQQPTSHDA VDVEQGIHEL RKLGIEQLLW
701: EFSRQEVNVA ERELSDAEDD LT

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.