Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G122700.1 | Wheat | nucleus | 92.5 | 88.59 |
| TraesCS4A01G192600.1 | Wheat | nucleus | 89.02 | 85.7 |
| HORVU4Hr1G023390.10 | Barley | cytosol, nucleus | 79.52 | 82.27 |
| Os11t0520500-00 | Rice | plasma membrane | 55.69 | 60.12 |
| Zm00001d049273_P001 | Maize | nucleus | 57.03 | 59.58 |
| CDY64711 | Canola | cytosol | 20.48 | 52.4 |
| EES08547 | Sorghum | nucleus | 57.83 | 52.05 |
| GSMUA_Achr9P01070_001 | Banana | cytosol | 12.72 | 49.48 |
| CDX68503 | Canola | nucleus | 5.09 | 49.35 |
| KRG93140 | Soybean | plastid | 31.59 | 44.78 |
| KRH36369 | Soybean | nucleus, plastid | 31.19 | 44.05 |
| VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 30.39 | 41.05 |
| KRH63847 | Soybean | endoplasmic reticulum, nucleus | 31.59 | 40.97 |
| KRH54118 | Soybean | endoplasmic reticulum | 31.59 | 40.97 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 30.92 | 40.46 |
| CDY09779 | Canola | nucleus, plastid | 28.51 | 39.59 |
| CDX69654 | Canola | nucleus, plastid | 28.25 | 39.0 |
| TraesCS3D01G435000.1 | Wheat | plastid | 29.85 | 38.65 |
| Bra008842.1-P | Field mustard | nucleus, plastid | 27.84 | 38.59 |
| AT5G13260.1 | Thale cress | plastid | 27.71 | 38.55 |
| Solyc03g118390.2.1 | Tomato | nucleus | 29.18 | 38.45 |
| CDY05877 | Canola | nucleus, plastid | 28.65 | 37.74 |
| AT3G48860.2 | Thale cress | nucleus | 28.65 | 37.09 |
| Bra018031.1-P | Field mustard | mitochondrion | 28.78 | 36.94 |
| CDX80382 | Canola | mitochondrion | 26.51 | 36.46 |
| CDX88044 | Canola | mitochondrion | 26.24 | 36.16 |
| Bra009703.1-P | Field mustard | mitochondrion | 23.96 | 35.52 |
| AT5G23700.3 | Thale cress | mitochondrion, plastid | 27.18 | 35.12 |
| TraesCS1D01G093800.1 | Wheat | plastid | 23.69 | 33.02 |
| Solyc05g023770.2.1 | Tomato | plastid | 17.54 | 33.0 |
| CDY34338 | Canola | nucleus, plastid | 27.98 | 32.1 |
| CDY03383 | Canola | nucleus, plastid | 27.98 | 32.01 |
| Bra013860.1-P | Field mustard | nucleus, plastid | 27.84 | 29.8 |
| AT4G25070.2 | Thale cress | plastid | 29.05 | 28.29 |
| CDY70607 | Canola | nucleus | 6.29 | 20.09 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G120700.1 | EnsemblPlantsGene:TraesCS4D01G120700 | ncoils:Coil | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF7 | SEG:seg |
| MapMan:22.5.7.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:101664630..101674704
Molecular Weight (calculated)
82356.3 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.694
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRMEEVMMA HAGAAGEFSM IIEAPLPNLQ RYRRNATPPA APSSDSPSRR RGGPHDAGAR DDVPTRLRRE GSVTEDVGNA RGVRGGEDMG YADDARSRRG
101: TGDARGARPA STRGREEETE APVRMRDPRR ESGRLSAPPG RVVEAQPDVA SAVEEETPLQ QLSRGARSSS ADRRVEAALE AEAMAARPSS RGSRREGSRD
201: DLVNAIVAEP AVEALAARPL SRRSRRDGSG EDVVNPIVAE PAAEALAGRP PSRRSRREGS GEAVVNAIVA EPAVEVEVEA DVESVGWGSS RGSEDGGEEP
301: VALPKPLESV LTGGRSRSNS PAISRNGVDS GVAKRAQSTG RSSFVPPVGA NVRPLQAVEV ANGTPRERRT IYPDPTFAQS GRSRDSHDSS TLTEEVEMLK
401: DENVNLLEKL GLAEEKFRQS EARTRELEKQ VANLGDGLSM EVKLMKRREE MLVRKEQEIR KALISKNDKS EEITTLQQQL QSASEKAAVA ERKLNEAESE
501: TKALRTMTQR MILSKEEMEE VVMKRCWLAR YWGLAVQYGI YPDISMSNYE YWSSFAPLPL EYVTSAGLRA KDGGSNELEE TDMLVHDLTV TAGEGNIETM
601: LAVDKGLKEL AFLKVEDAVL IALAQHHRPN VAELSDPDIK SSGDEKFTEA FDLSKEEEED VLFKQAWLMY FWRRAKIHNV EEDIAEERLQ MWVDRHGQQP
701: TSHDAVDVEQ GIHELRKLGI EQLLWEFSRQ EVNVAEGELS DAEDDLT
101: TGDARGARPA STRGREEETE APVRMRDPRR ESGRLSAPPG RVVEAQPDVA SAVEEETPLQ QLSRGARSSS ADRRVEAALE AEAMAARPSS RGSRREGSRD
201: DLVNAIVAEP AVEALAARPL SRRSRRDGSG EDVVNPIVAE PAAEALAGRP PSRRSRREGS GEAVVNAIVA EPAVEVEVEA DVESVGWGSS RGSEDGGEEP
301: VALPKPLESV LTGGRSRSNS PAISRNGVDS GVAKRAQSTG RSSFVPPVGA NVRPLQAVEV ANGTPRERRT IYPDPTFAQS GRSRDSHDSS TLTEEVEMLK
401: DENVNLLEKL GLAEEKFRQS EARTRELEKQ VANLGDGLSM EVKLMKRREE MLVRKEQEIR KALISKNDKS EEITTLQQQL QSASEKAAVA ERKLNEAESE
501: TKALRTMTQR MILSKEEMEE VVMKRCWLAR YWGLAVQYGI YPDISMSNYE YWSSFAPLPL EYVTSAGLRA KDGGSNELEE TDMLVHDLTV TAGEGNIETM
601: LAVDKGLKEL AFLKVEDAVL IALAQHHRPN VAELSDPDIK SSGDEKFTEA FDLSKEEEED VLFKQAWLMY FWRRAKIHNV EEDIAEERLQ MWVDRHGQQP
701: TSHDAVDVEQ GIHELRKLGI EQLLWEFSRQ EVNVAEGELS DAEDDLT
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.