Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G112600.1 | Wheat | plastid | 98.69 | 98.69 |
| TraesCS1A01G102200.1 | Wheat | nucleus, plastid | 62.5 | 87.7 |
| KXG21299 | Sorghum | mitochondrion | 60.45 | 56.15 |
| GSMUA_Achr2P01550_001 | Banana | cytosol | 33.58 | 48.52 |
| Solyc10g037930.1.1 | Tomato | cytosol | 14.55 | 48.45 |
| Zm00001d024833_P001 | Maize | mitochondrion | 28.54 | 45.0 |
| PGSC0003DMT400067804 | Potato | cytosol | 16.42 | 40.37 |
| VIT_14s0030g00770.t01 | Wine grape | cytosol | 3.73 | 38.46 |
| TraesCS3D01G435000.1 | Wheat | plastid | 39.18 | 36.4 |
| VIT_14s0030g00800.t01 | Wine grape | cytosol, plastid | 7.09 | 34.23 |
| KRG96906 | Soybean | nucleus, plastid | 36.01 | 30.2 |
| KRH68645 | Soybean | nucleus, plastid | 36.75 | 30.03 |
| VIT_14s0030g00780.t01 | Wine grape | cytosol | 8.4 | 30.0 |
| Bra039472.1-P | Field mustard | plastid | 36.75 | 25.19 |
| AT4G08630.1 | Thale cress | plastid | 36.94 | 24.75 |
| CDY27806 | Canola | plastid | 35.82 | 24.58 |
| CDY41922 | Canola | plastid | 36.38 | 24.44 |
| TraesCS4D01G120700.1 | Wheat | nucleus | 33.02 | 23.69 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G093800.1 | EnsemblPlantsGene:TraesCS1D01G093800 | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 | SEG:seg | MapMan:22.5.7.1.2 |
Description
No Description!
Coordinates
chr1D:-:79352308..79359220
Molecular Weight (calculated)
58002.6 Da
IEP (calculated)
6.458
GRAVY (calculated)
-0.627
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRMSSRPAS PGGGGGYVRR GAYVSSSAHT SPGGSPSASP VHTRHTRSGS LGGAGSTSSA GRRGAGAAAA ARAAAQRLAR VMGGPGGEDG GSGSEGEECE
101: LSGPPIELST PRRPGNRSPS PSIGRYLADQ APVISRPPSL TNRYVPGKSV PMIPSIKQSN RPATSGTGSE SSVSVPNRRE QRRSVDLGSS MRGRRSSSSL
201: NDEINTLQME NDSMYEKLEE DRCDEADVRQ AAGMGDAIEP EVNLISRKAA ALEQRRASMR IASRRGNSAS CDEITALRSE AKVAGEMATS VSRRVGIGSE
301: LRSLHATSNR TILSQEEMEE VVLKRCWLAR YWKLSVRLGI HSDIAAQKLE HWSSVAPLAL EVVLSIGQKA RDGTLSDNDV NDTAGDGNIE SMLLVEKGLR
401: ELASLKVEDA IMLALAEHRR YRPLSGPVFP ADSYSSPEST ELNEDEREDV RFKQAWLTYF WRRAKNHDVE EDIADDRLQF WIEQGNHPVT TSDVVEVDRG
501: LHELKKLGIE SQLWEATRRA FDDESINHGS PFGSEV
101: LSGPPIELST PRRPGNRSPS PSIGRYLADQ APVISRPPSL TNRYVPGKSV PMIPSIKQSN RPATSGTGSE SSVSVPNRRE QRRSVDLGSS MRGRRSSSSL
201: NDEINTLQME NDSMYEKLEE DRCDEADVRQ AAGMGDAIEP EVNLISRKAA ALEQRRASMR IASRRGNSAS CDEITALRSE AKVAGEMATS VSRRVGIGSE
301: LRSLHATSNR TILSQEEMEE VVLKRCWLAR YWKLSVRLGI HSDIAAQKLE HWSSVAPLAL EVVLSIGQKA RDGTLSDNDV NDTAGDGNIE SMLLVEKGLR
401: ELASLKVEDA IMLALAEHRR YRPLSGPVFP ADSYSSPEST ELNEDEREDV RFKQAWLTYF WRRAKNHDVE EDIADDRLQF WIEQGNHPVT TSDVVEVDRG
501: LHELKKLGIE SQLWEATRRA FDDESINHGS PFGSEV
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.