Factsheet for PGSC0003DMT400067804

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g037930.1.1	Tomato	cytosol	57.8	78.26
VIT_14s0030g00800.t01	Wine grape	cytosol, plastid	16.97	33.33
GSMUA_Achr2P01550_001	Banana	cytosol	40.37	23.72
TraesCS1A01G102200.1	Wheat	nucleus, plastid	40.37	23.04
VIT_14s0030g00780.t01	Wine grape	cytosol	12.84	18.67
TraesCS1B01G112600.1	Wheat	plastid	40.37	16.42
TraesCS1D01G093800.1	Wheat	plastid	40.37	16.42
KXG21299	Sorghum	mitochondrion	39.45	14.9
KRG96906	Soybean	nucleus, plastid	40.37	13.77
KRH68645	Soybean	nucleus, plastid	41.28	13.72
CDY27806	Canola	plastid	38.99	10.88
AT4G08630.1	Thale cress	plastid	39.91	10.88
CDY41922	Canola	plastid	39.45	10.78
Bra039472.1-P	Field mustard	plastid	38.53	10.74
Zm00001d024833_P001	Maize	mitochondrion	8.26	5.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400067804	EnsemblPlantsGene:PGSC0003DMG400026372	PANTHER:PTHR31762	PGSC:PGSC0003DMG400026372	SEG:seg	UniParc:UPI0002967D46
UniProt:M1CHW8	MapMan:35.1	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026372]

Coordinates

chr10:-:24057913..24059626

Molecular Weight (calculated)

24908.3 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.828

Length

218 amino acids

Sequence
(BLAST)

001: SLRTMSRRMI LSEEEMEEVV LKRCWLARYW TLCQTYGIHS DIAAAKQEYW SSLAPLPLEV VLEAGQKAKD DNSLVYNDGE DRETIGNDLN ELSGDGNVES
101: MLLVDKALRE LTSLKVDGAV SLAMAQQRRP TSLRATGLYR IIRLGTEPEW DHRTGTNRYR TGTNRYRSGT GRFDRVVDRY RDEPDRNYRD GGLVPSRPTI
201: YRDRTGTDRN GPERNGMG

Best Arabidopsis Sequence Match ( AT4G08630.1 )
(BLAST)

001: MRNTRPIHVR NKSTEPGTPS SPMMTSPLMH RHTRSGSNAG PASNAKKAQT KAAAQRLAAV MSNQTGDEED SDEDLSFDYN AIGTGSIGLA AGRSHPSRSP
101: VIRNPMARRQ QMATPQLVDE DNEDDDFSVD VTSSRPSIGL PGGRAMRPQS PVMTKIAPPR RTQPTNEGNK NDGNDDDDVV SIDYTIGRPS IGLGSGRAMR
201: PQSSMNKTQP QGRPVMAAHQ RADEDNEDDE TPYVYTSSIP SVGLPGGRAA RSRSPLTKNP PLRHPHAVAQ PPSNGESDVD YDESYTSGMP SIGLAGGRSM
301: RPRTPLSIRT KEQPQTGLPT SGSRSSLYED STESSAMSTL THPSQTTNQV EQSPSARSAI SNKSSQSLSA MDQPPSARSS FNGRPIRTAP LMPSSVPISL
401: KPVTPAFQSN TPTNLRKDKS RFSMDLGSSG NLRELGSQRS TSALQDEVDM LQEENESLLE KLRLAEDKCE EADARAKQLE KQVEILGEGV TMDARLLSRK
501: EAALQQREAA LRIASQNHGG KREDVSALHT EAEIAREEAA SSLDQLHEVE LELNSLKTVT KRLILTQEEM EEVVLKRCWL SRYWGLCVRH GIQPDIAGGK
601: HEYWSSFAPL PLEIVLSAGQ RARDGVSQSN NTYGEREKSL QNLQETSGEG NLENMIWVEK GLRELASLKV QEAVAFVMAQ NRRNTSSKFF VSDEVKMPMD
701: GQFEAFELSD EEVEDVNFKQ AWLSYFWRRA KNHEIESDLV DERLQYWINQ GTRSATSQDA VDVERGLMEL RKLNIESQLW QKSRKGLDHE SNPSHLELSF

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 1487 Blast hits to 747 proteins in 184 species: Archae - 0; Bacteria - 56; Metazoa - 305; Fungi - 197; Plants - 180; Viruses - 3; Other Eukaryotes - /.../source: NCBI BLink). [Source:TAIR;Acc:AT4G08630]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.